myRT

myRT report for GCA_000577815.1_JCC

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Seq: CBYM010000010.1 Clostridium saudiense genome assembly, contig: 00010, whole genome shotgun sequence (102497 bp)
Overview 1 RT 1: 61515-68460 bp Neighborhood of RT #1 [61515, 68465] Peptidase_M60 GLEYA F5_F8_type_C DUF5011 DUF5011 RVT-GII RVT-GII GIIM YkoI OmpR Feature: gene Location: 61515-61853 bp Feature: gene Location: 62434-66147 bp Feature: domain Description: Peptidase_M60 Location: 62623-63178 bp Feature: domain Description: Peptidase_M60 Location: 62623-631 78 bp Feature: domain Description: GLEYA Location: 63991-64273 bp Feature: domain Description: GLEYA Location: 63991 -64273 bp Feature: domain Description: F5_F8_type_C Location: 64489-64870 bp Feature: domain Description: F5_F8_type_C Location: 64489-64870 bp Feature: domain Description: DUF5011 Location: 65308-65494 bp Feature: domain Description: DUF501 1 Location: 65308-65494 bp Feature: domain Description: DUF5011 Location: 65575-65734 bp Feature: domain Description: DUF501 1 Location: 65575-65734 bp Feature: gene Location: 66204-66608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66210-66606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6621 0-66606 bp Feature: gene Location: 66639-67184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66642-66744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66642-66744 bp Feature: domain Description: GIIM Note: maturase Location: 66798-67026 bp Feature: domain Description: GIIM Note: maturase Location: 66798-67026 bp Feature: gene Location: 67412-67759 bp Feature: domain Description: YkoI Location: 67568-67733 bp Feature: domain Description: YkoI Location: 67568-67733 bp Feature: gene Location: 67797-68465 bp Feature: domain Description: OmpR Location: 67806-68460 bp Feature: domain Description: OmpR Location: 67806-68460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M60 (pfam13402), GLEYA (pfam10528), F5_F8_type_C (pfam00754), DUF5011 (pfam16403), RVT-GII, GIIM (pfam08388), YkoI (COG3212), OmpR (COG0745)

Seq: CBYM010000016.1 Clostridium saudiense genome assembly, contig: 00016, whole genome shotgun sequence (74749 bp)
Overview 1 RT 1: 68893-74165 bp Neighborhood of RT #1 [68893, 74320] HepA RhaT RVT-GII GIIM Feature: gene Location: 68893-71769 bp Feature: domain Description: HepA Location: 69595-71725 bp Feature: domain Description: HepA Location: 69595-7172 5 bp Feature: gene Location: 71874-72755 bp Feature: domain Description: RhaT Location: 71898-72711 bp Feature: domain Description: RhaT Location: 71898-72 711 bp Feature: gene Location: 72917-74320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73262-73880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732 62 -73880 bp Feature: domain Description: GIIM Note: maturase Location: 73931-74165 bp Feature: domain Description: GIIM Note: maturase Location: 73931-74165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RhaT (TIGR00776), RVT-GII, GIIM (pfam08388)

Seq: CBYM010000031.1 Clostridium saudiense genome assembly, contig: 00031, whole genome shotgun sequence (40747 bp)
Overview 1 RT 1: 28049-33392 bp Neighborhood of RT #1 [28049, 33718] BrnQ RVT-GII FlaA1 PRK10073 Feature: gene Location: 28049-29302 bp Feature: domain Description: BrnQ Location: 28061-29294 bp Feature: domain Description: BrnQ Location: 28061-29294 bp Feature: gene Location: 29393-29608 bp Feature: gene Location: 29611-30183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29929-30157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29929-3 0157 bp Feature: gene Location: 30667-32550 bp Feature: domain Description: FlaA1 Location: 30721-32524 bp Feature: domain Description: FlaA1 Location: 3 0721-3 2524 bp Feature: gene Location: 32744-33718 bp Feature: domain Description: PRK10073 Location: 32753-33392 bp Feature: domain Description: PRK10073 Location: 3 2753 -3 3 3 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnQ (COG1114), RVT-GII, FlaA1 (COG1086), PRK10073 (putative glycosyl transferase; Provisional)

Seq: CBYM010000052.1 Clostridium saudiense genome assembly, contig: 00052, whole genome shotgun sequence (13867 bp)
Overview 1 RT 1: 2372-5025 bp Neighborhood of RT #1 [2372, 5051] PBP2_TMBP_like UgpB RVT-GII GIIM LplB Feature: gene Location: 2372-2566 bp Feature: domain Description: PBP2_TMBP_like Location: 2378-2552 bp Feature: domain Description: PBP2_TMBP_like Location: 2378-2552 bp Feature: gene Location: 2615-2845 bp Feature: domain Description: UgpB Location: 2627-2798 bp Feature: domain Description: UgpB Location: 2627-2798 bp Feature: gene Location: 3010-3357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163-3349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163-334 9 bp Feature: gene Location: 3395-3538 bp Feature: domain Description: GIIM Note: maturase Location: 3398-3536 bp Feature: domain Description: GIIM Note: maturase Location: 3398-3536 bp Feature: gene Location: 4059-5051 bp Feature: domain Description: LplB Location: 4149-5025 bp Feature: domain Description: LplB Location: 4 14 9-5025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TMBP_like (cd13585), UgpB (COG1653), RVT-GII, GIIM (pfam08388), LplB (COG4209)