myRT

myRT report for GCA_000577955.1_SD_CC_2a

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Seq: CBXH010000033.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000068, whole genome shotgun sequence (555856 bp)
Overview 1 RT 1: 440232-445361 bp Neighborhood of RT #1 [440232, 446014] INTN1_C_like RVT-Retrons REC Feature: gene Location: 440232-440969 bp Ori: CDL99819.1 Feature: domain Description: INTN1_C_like Location: 440361-440883 bp Feature: domain Description: INTN1 _C_like Location: 440361 -440883 bp Feature: gene Location: 441126-441263 bp Feature: gene Location: 441473-443692 bp Ori: CDL99821.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441674-442259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 674-442259 bp Feature: gene Location: 443670-444314 bp Feature: gene Location: 444311-446014 bp Ori: CDL99823.1 Feature: domain Description: REC Location: 445130-445361 bp Feature: domain Description: REC Location: 4451 30-445361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: CBXH010000047.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000065, whole genome shotgun sequence (250926 bp)
Overview 1 RT 1: 63103-68564 bp Neighborhood of RT #1 [63103, 68581] DUF4134 RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 63103-63219 bp Ori: CDM01421.1 Feature: domain Description: DUF4134 Location: 63109-63205 bp Feature: domain Description: DUF4134 Location: 63109-632 05 bp Feature: gene Location: 63570-63731 bp Feature: gene Location: 63835-65490 bp Ori: CDM01423.1 Feature: domain Description: RVT_N Location: 63892-64129 bp Feature: domain Description: RVT_N Location: 63892 -6412 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64180-64828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64180-6482 8 bp Feature: domain Description: GIIM Note: maturase Location: 64885-65116 bp Feature: domain Description: GIIM Note: maturase Location: 64885-65116 bp Feature: gene Location: 65587-66168 bp Feature: gene Location: 66266-68581 bp Ori: CDM01425.1 Feature: domain Description: Bac_Flav_CT_G Location: 66269-68564 bp Feature: domain Description: Bac_Flav_CT_G Location: 662 69-68564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)

Seq: CBXH010000036.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000042, whole genome shotgun sequence (81394 bp)
Overview 1 RT 1: 70949-74970 bp Neighborhood of RT #1 [70949, 74970] dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 70949-71140 bp Feature: gene Location: 71247-71405 bp Ori: CDM00215.1 Feature: domain Description: dnaG Location: 71316-71397 bp Feature: domain Description: dnaG Location: 713 16-713 97 bp Feature: gene Location: 71955-73784 bp Ori: CDM00216.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72240-73062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72240-73 062 bp Feature: domain Description: Intron_maturas2 Location: 73131-73440 bp Feature: domain Description: Intron_maturas2 Location: 73 13 1-73 440 bp Feature: gene Location: 73933-74682 bp Ori: CDM00217.1 Feature: domain Description: Toprim_2 Location: 74305-74587 bp Feature: domain Description: Toprim_2 Location: 743 05-74587 bp Feature: gene Location: 74809-74970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: CBXH010000030.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000051, whole genome shotgun sequence (57933 bp)
Overview 1 RT 1: 55019-57161 bp Neighborhood of RT #1 [55019, 57535] DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 55019-55264 bp Ori: CDL99350.1 Feature: domain Description: DUF4134 Location: 55073-55250 bp Feature: domain Description: DUF4 134 Location: 55073-55250 bp Feature: gene Location: 55615-55776 bp Feature: gene Location: 55880-57535 bp Ori: CDL99352.1 Feature: domain Description: RVT_N Location: 55937-56174 bp Feature: domain Description: RVT_N Location: 55937-56174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56225-56873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56225-56873 bp Feature: domain Description: GIIM Note: maturase Location: 56930-57161 bp Feature: domain Description: GIIM Note: maturase Location: 56930-57161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CBXH010000062.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000047, whole genome shotgun sequence (46637 bp)
Overview 1 RT 1: 21595-28236 bp Neighborhood of RT #1 [21595, 28697] DUF4134 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 21595-22263 bp Feature: gene Location: 22339-22725 bp Ori: CDM02113.1 Feature: domain Description: DUF4134 Location: 22447-22720 bp Feature: domain Description: DUF4134 Location: 22447-22720 bp Feature: gene Location: 23443-25152 bp Ori: CDM02114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23608-24427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23608-24427 bp Feature: domain Description: Intron_maturas2 Location: 24502-24829 bp Feature: domain Description: Intron_maturas2 Location: 245 02-24829 bp Feature: domain Description: HNHc Note: nucleases Location: 24982-25129 bp Feature: domain Description: HNHc Note: nucleases Location: 24982-25 129 bp Feature: gene Location: 25363-28059 bp Ori: CDM02115.1 Feature: domain Description: Bac_Flav_CT_G Location: 25549-28033 bp Feature: domain Description: Bac_Flav_CT_G Location: 25 5 49-28033 bp Feature: gene Location: 28071-28697 bp Ori: CDM02116.1 Feature: domain Description: DUF4141 Location: 28080-28236 bp Feature: domain Description: DUF4141 Location: 28080-28236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605)

Seq: CBXH010000017.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000067, whole genome shotgun sequence (382742 bp)
Overview 1 RT 1: 321962-325464 bp Neighborhood of RT #1 [321962, 325493] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 321962-322249 bp Feature: gene Location: 322453-322731 bp Feature: gene Location: 322694-324115 bp Ori: CDL98218.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 323069-323795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32306 9-323795 bp Feature: gene Location: 324130-324537 bp Ori: CDL98219.1 Feature: domain Description: Avd_like Location: 324163-324472 bp Feature: domain Description: Avd_like Location: 32416 3-324472 bp Feature: gene Location: 324684-325493 bp Ori: CDL98220.1 Feature: domain Description: DUF1566 Location: 325215-325464 bp Feature: domain Description: DUF156 6 Location: 325215-32546 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CBXH010000001.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000031, whole genome shotgun sequence (37802 bp)
Overview 1 RT 1: 4073-6117 bp Neighborhood of RT #1 [4073, 6117] RVT-GII Feature: gene Location: 4073-4225 bp Feature: gene Location: 4554-4703 bp Feature: gene Location: 4851-5039 bp Ori: CDL97136.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4944-5013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4944-5013 bp Feature: gene Location: 5242-5478 bp Feature: gene Location: 5965-6117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CBXH010000005.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000029, whole genome shotgun sequence (130340 bp)
Overview 1 RT 1: 124935-129920 bp Neighborhood of RT #1 [124935, 129925] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Feature: gene Location: 124935-125108 bp Ori: CDL97599.1 Feature: domain Description: Bac_Flav_CT_G Location: 124938-125094 bp Feature: domain Description: Bac_Flav_CT_G Location: 124938 -125094 bp Feature: gene Location: 125115-125378 bp Ori: CDL97600.1 Feature: domain Description: Bac_Flav_CT_G Location: 125127-125376 bp Feature: domain Description: Bac_Flav_CT_G Location: 125127-125376 bp Feature: gene Location: 125471-127138 bp Ori: CDL97601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125591-126413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125591-126413 bp Feature: domain Description: Intron_maturas2 Location: 126488-126803 bp Feature: domain Description: Intron_maturas2 Location: 12648 8 -1268 03 bp Feature: domain Description: HNHc Note: nucleases Location: 126959-127109 bp Feature: domain Description: HNHc Note: nucleases Location: 126959-127109 bp Feature: gene Location: 127829-129658 bp Ori: CDL97602.1 Feature: domain Description: Bac_Flav_CT_G Location: 127832-129644 bp Feature: domain Description: Bac_Flav_CT_G Location: 1278 32-129644 bp Feature: gene Location: 129755-129925 bp Ori: CDL97603.1 Feature: domain Description: DUF3875 Location: 129764-129920 bp Feature: domain Description: DUF38 75 Location: 129764-129920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991)

Seq: CBXH010000041.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000064, whole genome shotgun sequence (339116 bp)
Overview 1 RT 1: 2109-13566 bp Neighborhood of RT #1 [2109, 13697] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 2109-2249 bp Feature: gene Location: 2260-4371 bp Feature: gene Location: 4579-5709 bp Ori: CDM00424.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4900-5443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49 00-5443 bp Feature: gene Location: 5760-11816 bp Ori: CDM00425.1 Feature: domain Description: DUF4011 Location: 7005-7518 bp Feature: domain Description: DUF4011 Location: 7005-7518 bp Feature: domain Description: DEXXQc_SF1 Location: 7857-8286 bp Feature: domain Description: DEXXQc_SF1 Location: 7857-8286 bp Feature: domain Description: DEXXQc_SF1 Location: 9288-10044 bp Feature: domain Description: DEXXQc_SF1 Location: 9 288-10044 bp Feature: domain Description: TIGR00376 Location: 10173-10563 bp Feature: domain Description: TIGR00376 Location: 10173-10563 bp Feature: domain Description: MTES_1575 Location: 10716-11001 bp Feature: domain Description: MTES_1575 Location: 10716-11001 bp Feature: domain Description: DUF3320 Location: 11331-11466 bp Feature: domain Description: DUF3320 Location: 11331-11466 bp Feature: gene Location: 11898-13697 bp Ori: CDM00426.1 Feature: domain Description: rpsA Location: 11967-13566 bp Feature: domain Description: rpsA Location: 119 67-13566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: CBXH010000068.1 Bacteroides xylanisolvens SD CC 2a WGS project CBXH000000000 data, contig 000026, whole genome shotgun sequence (24145 bp)
Overview 1 RT 1: 399-2874 bp Neighborhood of RT #1 [399, 2888] RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 399-2054 bp Ori: CDM02426.1 Feature: domain Description: RVT_N Location: 456-693 bp Feature: domain Description: RVT_N Location: 456-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1392 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1680 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1680 bp Feature: gene Location: 2158-2319 bp Feature: gene Location: 2670-2888 bp Ori: CDM02428.1 Feature: domain Description: DUF4134 Location: 2691-2874 bp Feature: domain Description: DUF4134 Location: 2691-2874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572)