myRT

myRT report for GCA_000582685.1_ASM58268v1

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Seq: ALWD01000163.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.15_C, whole genome shotgun sequence (177069 bp)
Overview 1 RT 1: 21666-26631 bp Neighborhood of RT #1 [21666, 26666] TIGR03985 SpoT RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 21666-23168 bp Feature: domain Description: TIGR03985 Location: 22392-23166 bp Feature: domain Description: TIGR03985 Location: 22392-231 66 bp Feature: gene Location: 23185-23775 bp Feature: domain Description: SpoT Location: 23200-23707 bp Feature: domain Description: SpoT Location: 23200-23707 bp Feature: gene Location: 24045-25013 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24252-24858 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24252-24858 bp Feature: gene Location: 25190-26194 bp Feature: domain Description: Cas1_I-II-III Location: 25202-26156 bp Feature: domain Description: Cas1 _I-II-III Location: 25202-261 56 bp Feature: gene Location: 26391-26666 bp Feature: domain Description: Cas2_I_II_III Location: 26400-26631 bp Feature: domain Description: Cas2_I_II_III Location: 26400-26631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03985 (CRISPR-associated protein, TIGR03985 family), SpoT (COG0317), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: ALWD01000002.1 [Scytonema hofmanni] UTEX 2349 Tol9009DRAFT_TPD.2_C, whole genome shotgun sequence (182263 bp)
Overview 1 RT 1: 26863-32542 bp 2 RT 2: 147389-155659 bp Neighborhood of RT #1 [26863, 32565] RVT_N RVT-GII GIIM HNHc FhaB NHLM_micro_ABC1 Neighborhood of RT #2 [147389, 155659] DUF4158 DDE_Tnp_Tn3 INT_ICEBs1_C_like RVT-CRISPR cas1 DUF4384 Feature: gene Location: 26863-27093 bp Feature: gene Location: 27307-27642 bp Feature: gene Location: 27990-29660 bp Feature: domain Description: RVT_N Location: 28032-28278 bp Feature: domain Description: RVT_N Location: 2 8032 -2 82 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28326-28965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 832 6-2 8965 bp Feature: domain Description: GIIM Note: maturase Location: 29046-29271 bp Feature: domain Description: GIIM Note: maturase Location: 2 9046-2 92 71 bp Feature: domain Description: HNHc Note: nucleases Location: 29475-29640 bp Feature: domain Description: HNHc Note: nucleases Location: 2 9475-2 9640 bp Feature: gene Location: 29737-30138 bp Feature: domain Description: FhaB Location: 29788-30121 bp Feature: domain Description: FhaB Location: 2 9788-3012 1 bp Feature: gene Location: 30310-32565 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30373-32542 bp Feature: domain Description: NHLM_micro_ABC1 Location: 30373-32 542 bp Feature: gene Location: 147389-150073 bp Feature: domain Description: DUF4158 Location: 147404-147581 bp Feature: domain Description: DUF4158 Location: 147404-147581 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 148823-149990 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 14882 3-149990 bp Feature: gene Location: 150073-150495 bp Feature: domain Description: INT_ICEBs1_C_like Location: 150124-150325 bp Feature: domain Description: INT_ICEBs1_C_like Location: 15012 4-15032 5 bp Feature: gene Location: 151368-153377 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 151557-152166 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 151557-152 166 bp Feature: domain Description: cas1 Location: 152382-153351 bp Feature: domain Description: cas1 Location: 152 382 -153351 bp Feature: gene Location: 154104-154856 bp Feature: domain Description: DUF4384 Location: 154479-154710 bp Feature: domain Description: DUF4384 Location: 154479-154710 bp Feature: gene Location: 155417-155659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), FhaB (COG3210), NHLM_micro_ABC1 (TIGR03796), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), INT_ICEBs1_C_like (cd01189), RVT-CRISPR
cas1 (TIGR00287), DUF4384 (pfam14326)

Seq: KK073765.1 Tolypothrix [Scytonema hofmanni] UTEX 2349 genomic scaffold Tol9009DRAFT_TPD.5, whole genome shotgun sequence (241381 bp)
Overview 1 RT 1: 1211-9175 bp 2 RT 2: 19680-24004 bp Neighborhood of RT #1 [1211, 9588] DDE_Tnp_Tn3 Methyltransf_31 RVT_N RVT-GII PinE Zn_ribbon_recom DUF5372 RVT-GII DDE_Tnp_1 Neighborhood of RT #2 [19680, 24012] RVT_N RVT-GII GIIM HNH DDE_Tnp_Tn3 DDE_Tnp_Tn3 Feature: gene Location: 1211-1381 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1214-1319 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1214-13 19 bp Feature: gene Location: 1740-2447 bp Feature: domain Description: Methyltransf_31 Location: 1923-2250 bp Feature: domain Description: Methyltransf_3 1 Location: 1923 -2250 bp Feature: gene Location: 3260-3646 bp Feature: domain Description: RVT_N Location: 3296-3542 bp Feature: domain Description: RVT_N Location: 3 296-3 542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3584-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 584-3 629 bp Feature: gene Location: 4022-4249 bp Feature: gene Location: 4357-4917 bp Feature: gene Location: 5981-7093 bp Feature: domain Description: PinE Location: 6023-6653 bp Feature: domain Description: PinE Location: 6023 -6653 bp Feature: domain Description: Zn_ribbon_recom Location: 6977-7043 bp Feature: domain Description: Zn_ribbon_recom Location: 6977-7043 bp Feature: gene Location: 7099-7548 bp Feature: domain Description: DUF5372 Location: 7120-7330 bp Feature: domain Description: DUF53 72 Location: 7120-73 3 0 bp Feature: gene Location: 7566-8174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7587-8145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7587-8145 bp Feature: gene Location: 8221-8691 bp Feature: gene Location: 8776-9588 bp Feature: domain Description: DDE_Tnp_1 Location: 8785-9175 bp Feature: domain Description: DDE_Tnp_1 Location: 8785-9175 bp Feature: gene Location: 19680-19835 bp Feature: gene Location: 20025-20243 bp Feature: gene Location: 20318-22009 bp Feature: domain Description: RVT_N Location: 20372-20618 bp Feature: domain Description: RVT_N Location: 203 72-20618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20666-21317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20666-213 17 bp Feature: domain Description: GIIM Note: maturase Location: 21368-21602 bp Feature: domain Description: GIIM Note: maturase Location: 213 68-21602 bp Feature: domain Description: HNH Note: nucleases Location: 21854-21989 bp Feature: domain Description: HNH Note: nucleases Location: 21854-21989 bp Feature: gene Location: 22176-23039 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22179-22998 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22179-22998 bp Feature: gene Location: 23119-24012 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 23746-24004 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 23 746-24004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), Methyltransf_31 (pfam13847), RVT_N (pfam13655), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF5372 (pfam17342), DDE_Tnp_1 (pfam01609), GIIM (pfam08388), HNH (pfam01844)

Seq: KK073767.1 Tolypothrix [Scytonema hofmanni] UTEX 2349 genomic scaffold Tol9009DRAFT_TPD.7, whole genome shotgun sequence (105032 bp)
Overview 1 RT 1: 50869-58548 bp Neighborhood of RT #1 [50869, 58548] pPIWI_RE_Y pPIWI_RE_REase RVT_N RVT-GII GIIM McrA Feature: gene Location: 50869-52188 bp Feature: domain Description: pPIWI_RE_Y Location: 51136-51541 bp Feature: domain Description: pPIWI_RE_Y Location: 51136-5154 1 bp Feature: domain Description: pPIWI_RE_REase Location: 51841-52174 bp Feature: domain Description: pPIWI_RE_REase Location: 5184 1-52174 bp Feature: gene Location: 52484-52822 bp Feature: gene Location: 53192-54922 bp Feature: domain Description: RVT_N Location: 53231-53477 bp Feature: domain Description: RVT_N Location: 53231-534 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53519-54197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53519-54 197 bp Feature: domain Description: GIIM Note: maturase Location: 54296-54530 bp Feature: domain Description: GIIM Note: maturase Location: 54 296-54 530 bp Feature: domain Description: McrA Location: 54617-54887 bp Feature: domain Description: McrA Location: 54 617-54 887 bp Feature: gene Location: 55101-55295 bp Feature: gene Location: 55933-58548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pPIWI_RE_Y (pfam18156), pPIWI_RE_REase (pfam18154), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: KK073768.1 Tolypothrix [Scytonema hofmanni] UTEX 2349 genomic scaffold Tol9009DRAFT_TPD.8, whole genome shotgun sequence (5400510 bp)
Overview 1 RT 1: 1295700-1303707 bp 2 RT 2: 1678031-1684561 bp 3 RT 3: 1964800-1973151 bp 4 RT 4: 2472629-2476492 bp 5 RT 5: 2691443-2697758 bp 6 RT 6: 2795580-2801047 bp 7 RT 7: 2814919-2820788 bp 8 RT 8: 4040786-4046076 bp Neighborhood of RT #1 [1295700, 1303709] RTPR Hop LAGLIDADG_3 PRK07773 Hop LAGLIDADG_3 RTPR RVT_N RVT-GII GIIM McrA RTPR PPOX_FMN_cyano Neighborhood of RT #2 [1678031, 1684629] HicB HTH_AsnC-type SWIM RVT-Retrons FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP FG-GAP Neighborhood of RT #3 [1964800, 1973162] HcaE RRXRR RVT_N RVT-GII GIIM McrA CAP_ED SunT Neighborhood of RT #4 [2472629, 2476524] InsQ RVT_N RVT-GII McrA TPR TPR_1 TPR Neighborhood of RT #5 [2691443, 2697758] MltA RVT_N RVT-GII GIIM HNHc COG2343 Neighborhood of RT #6 [2795580, 2801058] DUF1815 DUF2839 RVT_N RVT-GII McrA DinG Neighborhood of RT #7 [2814919, 2820788] XisH RpoE PRK11924 RVT_N RVT-GII GIIM McrA RRXRR Neighborhood of RT #8 [4040786, 4046076] XisH MATE_DinF_like RVT_N RVT-GII GIIM McrA Feature: gene Location: 1295700-1295909 bp Feature: gene Location: 1296112-1299858 bp Feature: domain Description: RTPR Location: 1296118-1296697 bp Feature: domain Description: RTPR Location: 1296118-1296697 bp Feature: domain Description: Hop Location: 1296832-1297021 bp Feature: domain Description: Hop Location: 1296832-1297021 bp Feature: domain Description: LAGLIDADG_3 Location: 1297342-1297630 bp Feature: domain Description: LAGLIDADG_3 Location: 1297342-1297630 bp Feature: domain Description: PRK07773 Location: 1297720-1297816 bp Feature: domain Description: PRK07773 Location: 1297720-1297816 bp Feature: domain Description: Hop Location: 1297966-1298092 bp Feature: domain Description: Hop Location: 1297966-1298092 bp Feature: domain Description: LAGLIDADG_3 Location: 1298422-1298569 bp Feature: domain Description: LAGLIDADG_3 Location: 1298422-12985 69 bp Feature: domain Description: RTPR Location: 1298812-1299838 bp Feature: domain Description: RTPR Location: 1298812-1299838 bp Feature: gene Location: 1300132-1301958 bp Feature: domain Description: RVT_N Location: 1300174-1300420 bp Feature: domain Description: RVT_N Location: 1300174-1300420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1300462-1301146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1300462-1301146 bp Feature: domain Description: GIIM Note: maturase Location: 1301245-1301479 bp Feature: domain Description: GIIM Note: maturase Location: 1301245 -1301479 bp Feature: domain Description: McrA Location: 1301572-1301848 bp Feature: domain Description: McrA Location: 13015 72-1301848 bp Feature: gene Location: 1302599-1302988 bp Feature: domain Description: RTPR Location: 1302632-1302971 bp Feature: domain Description: RTPR Location: 1302632-1302971 bp Feature: gene Location: 1303122-1303709 bp Feature: domain Description: PPOX_FMN_cyano Location: 1303137-1303707 bp Feature: domain Description: PPOX_FMN_cyano Location: 1303137-1303707 bp Feature: gene Location: 1678031-1678249 bp Feature: domain Description: HicB Location: 1678034-1678217 bp Feature: domain Description: HicB Location: 1678034-1678217 bp Feature: gene Location: 1678311-1679945 bp Feature: domain Description: HTH_AsnC-type Location: 1679487-1679568 bp Feature: domain Description: HTH_AsnC-type Location: 1679487-16795 68 bp Feature: domain Description: SWIM Location: 1679829-1679919 bp Feature: domain Description: SWIM Location: 1679829-1679919 bp Feature: gene Location: 1680504-1681919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1681050-1681668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168105 0-1681668 bp Feature: gene Location: 1682069-1683244 bp Feature: domain Description: FG-GAP Location: 1682249-1682279 bp Feature: domain Description: FG-GAP Location: 1682249-1682279 bp Feature: domain Description: FG-GAP Location: 1682396-1682471 bp Feature: domain Description: FG-GAP Location: 1682396-1682471 bp Feature: domain Description: FG-GAP Location: 1682537-1682615 bp Feature: domain Description: FG-GAP Location: 16825 37-1682615 bp Feature: domain Description: FG-GAP Location: 1682666-1682756 bp Feature: domain Description: FG-GAP Location: 1682666-168275 6 bp Feature: domain Description: FG-GAP Location: 1682822-1682894 bp Feature: domain Description: FG-GAP Location: 1682822-1682894 bp Feature: domain Description: FG-GAP Location: 1682951-1683038 bp Feature: domain Description: FG-GAP Location: 168295 1-1683038 bp Feature: domain Description: FG-GAP Location: 1683092-1683179 bp Feature: domain Description: FG-GAP Location: 1683092-1683179 bp Feature: gene Location: 1683469-1684629 bp Feature: domain Description: FG-GAP Location: 1683613-1683703 bp Feature: domain Description: FG-GAP Location: 1683613-1683703 bp Feature: domain Description: FG-GAP Location: 1683763-1683814 bp Feature: domain Description: FG-GAP Location: 1683763-1683814 bp Feature: domain Description: FG-GAP Location: 1683913-1683997 bp Feature: domain Description: FG-GAP Location: 1683913-1683997 bp Feature: domain Description: FG-GAP Location: 1684060-1684138 bp Feature: domain Description: FG-GAP Location: 1684060-1684138 bp Feature: domain Description: FG-GAP Location: 1684189-1684276 bp Feature: domain Description: FG-GAP Location: 1684189-1684276 bp Feature: domain Description: FG-GAP Location: 1684330-1684423 bp Feature: domain Description: FG-GAP Location: 1684330-1684423 bp Feature: domain Description: FG-GAP Location: 1684480-1684561 bp Feature: domain Description: FG-GAP Location: 1684480-16845 61 bp Feature: gene Location: 1964800-1965885 bp Feature: domain Description: HcaE Location: 1964815-1965838 bp Feature: domain Description: HcaE Location: 1964815 -1965 838 bp Feature: gene Location: 1966474-1967646 bp Feature: domain Description: RRXRR Location: 1966483-1967002 bp Feature: domain Description: RRXRR Location: 1966483-1967002 bp Feature: gene Location: 1967905-1969671 bp Feature: domain Description: RVT_N Location: 1967965-1968211 bp Feature: domain Description: RVT_N Location: 1967965 -1968211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1968253-1968892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196825 3-1968892 bp Feature: domain Description: GIIM Note: maturase Location: 1969003-1969222 bp Feature: domain Description: GIIM Note: maturase Location: 1969003-1969222 bp Feature: domain Description: McrA Location: 1969288-1969600 bp Feature: domain Description: McrA Location: 1969288-1969600 bp Feature: gene Location: 1969903-1970097 bp Feature: gene Location: 1970460-1973162 bp Feature: domain Description: CAP_ED Location: 1970589-1970874 bp Feature: domain Description: CAP_ED Location: 19705 89-1970874 bp Feature: domain Description: SunT Location: 1971057-1973151 bp Feature: domain Description: SunT Location: 197105 7-197315 1 bp Feature: gene Location: 2472629-2473084 bp Feature: domain Description: InsQ Location: 2472644-2473025 bp Feature: domain Description: InsQ Location: 2472644-2473025 bp Feature: gene Location: 2473199-2473366 bp Feature: gene Location: 2473623-2475203 bp Feature: domain Description: RVT_N Location: 2473659-2473902 bp Feature: domain Description: RVT_N Location: 247365 9-2473902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473956-2474616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247395 6-2474616 bp Feature: domain Description: McrA Location: 2474850-2475171 bp Feature: domain Description: McrA Location: 247485 0-2475 171 bp Feature: gene Location: 2475466-2475624 bp Feature: gene Location: 2475658-2476524 bp Feature: domain Description: TPR Location: 2475814-2476066 bp Feature: domain Description: TPR Location: 2475 814-2476066 bp Feature: domain Description: TPR_1 Location: 2476093-2476189 bp Feature: domain Description: TPR_1 Location: 2476093-2476189 bp Feature: domain Description: TPR Location: 2476207-2476492 bp Feature: domain Description: TPR Location: 2476207-2476492 bp Feature: gene Location: 2691443-2692672 bp Feature: domain Description: MltA Location: 2691605-2692667 bp Feature: domain Description: MltA Location: 2691605 -2692667 bp Feature: gene Location: 2692771-2693211 bp Feature: gene Location: 2693720-2695603 bp Feature: domain Description: RVT_N Location: 2693858-2694104 bp Feature: domain Description: RVT_N Location: 269385 8-2694104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694146-2694842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694146-2694842 bp Feature: domain Description: GIIM Note: maturase Location: 2694941-2695175 bp Feature: domain Description: GIIM Note: maturase Location: 2694941-2695 175 bp Feature: domain Description: HNHc Note: nucleases Location: 2695385-2695538 bp Feature: domain Description: HNHc Note: nucleases Location: 2695 385 -2695 5 38 bp Feature: gene Location: 2696201-2696482 bp Feature: domain Description: COG2343 Location: 2696207-2696471 bp Feature: domain Description: COG2343 Location: 2696207-2696471 bp Feature: gene Location: 2697318-2697758 bp Feature: gene Location: 2795580-2795924 bp Feature: domain Description: DUF1815 Location: 2795586-2795880 bp Feature: domain Description: DUF1815 Location: 2795 5 86-2795 880 bp Feature: gene Location: 2796783-2796965 bp Feature: domain Description: DUF2839 Location: 2796786-2796954 bp Feature: domain Description: DUF2839 Location: 2796786-279695 4 bp Feature: gene Location: 2797061-2798635 bp Feature: domain Description: RVT_N Location: 2797097-2797337 bp Feature: domain Description: RVT_N Location: 2797097-2797337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2797394-2798051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2797394-279805 1 bp Feature: domain Description: McrA Location: 2798282-2798612 bp Feature: domain Description: McrA Location: 2798282-2798612 bp Feature: gene Location: 2798646-2799074 bp Feature: gene Location: 2799502-2801058 bp Feature: domain Description: DinG Location: 2799544-2801047 bp Feature: domain Description: DinG Location: 27995 44-2801047 bp Feature: gene Location: 2814919-2815335 bp Feature: domain Description: XisH Location: 2814922-2815321 bp Feature: domain Description: XisH Location: 2814922-2815 321 bp Feature: gene Location: 2815520-2816500 bp Feature: domain Description: RpoE Location: 2815556-2816087 bp Feature: domain Description: RpoE Location: 2815 5 5 6-2816087 bp Feature: domain Description: PRK11924 Location: 2816369-2816483 bp Feature: domain Description: PRK11924 Location: 2816369-2816483 bp Feature: gene Location: 2817290-2819056 bp Feature: domain Description: RVT_N Location: 2817350-2817596 bp Feature: domain Description: RVT_N Location: 281735 0-28175 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2817638-2818277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2817638-2818277 bp Feature: domain Description: GIIM Note: maturase Location: 2818388-2818607 bp Feature: domain Description: GIIM Note: maturase Location: 2818388-2818607 bp Feature: domain Description: McrA Location: 2818673-2818985 bp Feature: domain Description: McrA Location: 2818673-2818985 bp Feature: gene Location: 2819278-2820378 bp Feature: domain Description: RRXRR Location: 2819290-2819779 bp Feature: domain Description: RRXRR Location: 2819290-2819779 bp Feature: gene Location: 2820552-2820788 bp Feature: gene Location: 4040786-4041202 bp Feature: domain Description: XisH Location: 4040789-4041185 bp Feature: domain Description: XisH Location: 4040789-4041185 bp Feature: gene Location: 4041632-4043188 bp Feature: domain Description: MATE_DinF_like Location: 4041749-4043012 bp Feature: domain Description: MATE_DinF_like Location: 4041749-4043012 bp Feature: gene Location: 4043526-4045292 bp Feature: domain Description: RVT_N Location: 4043586-4043832 bp Feature: domain Description: RVT_N Location: 40435 86-4043832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4043874-4044513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4043874-40445 13 bp Feature: domain Description: GIIM Note: maturase Location: 4044624-4044843 bp Feature: domain Description: GIIM Note: maturase Location: 4044624-4044843 bp Feature: domain Description: McrA Location: 4044909-4045221 bp Feature: domain Description: McrA Location: 4044909-4045 221 bp Feature: gene Location: 4045524-4045718 bp Feature: gene Location: 4045849-4046076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), Hop (COG1372), LAGLIDADG_3 (pfam14528), PRK07773 (replicative DNA helicase; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PPOX_FMN_cyano (TIGR04026), HicB (pfam05534)
HTH_AsnC-type (pfam13404), SWIM (pfam04434), RVT-Retrons, FG-GAP (pfam01839), HcaE (COG4638), RRXRR (pfam14239), CAP_ED (cl00047), SunT (COG2274), InsQ (COG0675), TPR (smart00028)
TPR_1 (pfam00515), MltA (smart00925), HNHc (smart00507), COG2343 (Uncharacterized conserved protein, DUF427 family ), DUF1815 (pfam08844), DUF2839 (pfam10999), DinG (COG1199), XisH (pfam08814), RpoE (COG3343), PRK11924 (RNA polymerase sigma factor; Provisional)
MATE_DinF_like (cd13136)

Seq: KK073769.1 Tolypothrix [Scytonema hofmanni] UTEX 2349 genomic scaffold Tol9009DRAFT_TPD.9, whole genome shotgun sequence (1517051 bp)
Overview 1 RT 1: 110515-116726 bp 2 RT 2: 936655-939715 bp Neighborhood of RT #1 [110515, 116726] PspF Fer4_5 InsQ RVT-GII McrA RVT_N RVT-GII InsQ Neighborhood of RT #2 [936655, 939715] Pentapeptide RVT_N RVT-GII GIIM HNH Pentapeptide Feature: gene Location: 110515-113037 bp Feature: domain Description: PspF Location: 110659-111997 bp Feature: domain Description: PspF Location: 1106 59-111997 bp Feature: domain Description: Fer4_5 Location: 112141-112255 bp Feature: domain Description: Fer4_5 Location: 112141-112255 bp Feature: gene Location: 113072-113422 bp Feature: domain Description: InsQ Location: 113075-113375 bp Feature: domain Description: InsQ Location: 113075-113375 bp Feature: gene Location: 113521-114252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113524-113668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113524-1136 6 8 bp Feature: domain Description: McrA Location: 113902-114232 bp Feature: domain Description: McrA Location: 113902-114232 bp Feature: gene Location: 114254-115096 bp Feature: domain Description: RVT_N Location: 114290-114530 bp Feature: domain Description: RVT_N Location: 114290-114530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114587-115046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114587-115046 bp Feature: gene Location: 115638-116471 bp Feature: domain Description: InsQ Location: 115644-116457 bp Feature: domain Description: InsQ Location: 1156 44-116 457 bp Feature: gene Location: 116532-116726 bp Feature: gene Location: 936655-936807 bp Feature: domain Description: Pentapeptide Location: 936715-936790 bp Feature: domain Description: Pentapeptide Location: 936 715-936 790 bp Feature: gene Location: 936889-937137 bp Feature: gene Location: 937371-939143 bp Feature: domain Description: RVT_N Location: 937407-937653 bp Feature: domain Description: RVT_N Location: 937407-9376 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937695-938367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9376 95-93836 7 bp Feature: domain Description: GIIM Note: maturase Location: 938451-938679 bp Feature: domain Description: GIIM Note: maturase Location: 938451-9386 79 bp Feature: domain Description: HNH Note: nucleases Location: 938904-939039 bp Feature: domain Description: HNH Note: nucleases Location: 938904-939039 bp Feature: gene Location: 939177-939473 bp Feature: domain Description: Pentapeptide Location: 939243-939342 bp Feature: domain Description: Pentapeptide Location: 939243-939342 bp Feature: gene Location: 939557-939715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PspF (COG1221), Fer4_5 (pfam12801), InsQ (COG0675), RVT-GII, McrA (COG4058), RVT_N (pfam13655), Pentapeptide (pfam00805), GIIM (pfam08388), HNH (pfam01844)