myRT

myRT report for GCA_000583675.1_ASM58367v1

Download annotations/find similar RTs

Seq: BAMD01000216.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 DNA, contig: JCM21142.contig00216, whole genome shotgun sequence (1236 bp)
Overview 1 RT 1: 74-578 bp Neighborhood of RT #1 [74, 967] RVT-UG2 Feature: gene Location: 74-967 bp Ori: GAF06009.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 104-578 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 04-578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: BAMD01000149.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 DNA, contig: JCM21142.contig00149, whole genome shotgun sequence (3704 bp)
Overview 1 RT 1: 854-3282 bp Neighborhood of RT #1 [854, 3356] RVT-GII TlpA_like_family Feature: gene Location: 854-1030 bp Feature: gene Location: 1508-1804 bp Ori: GAF05891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1511-1640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1511-1640 bp Feature: gene Location: 1932-3356 bp Ori: GAF05892.1 Feature: domain Description: TlpA_like_family Location: 2985-3282 bp Feature: domain Description: TlpA_like_family Location: 2 985-32 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TlpA_like_family (cd02966)

Seq: BAMD01000027.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 DNA, contig: JCM21142.contig00027, whole genome shotgun sequence (61787 bp)
Overview 1 RT 1: 10515-17170 bp Neighborhood of RT #1 [10515, 17199] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like ComA-like_MBL-fold RVT-UG9 RVT-UG9 PRK14975 DEDDh Feature: gene Location: 10515-11819 bp Ori: GAF03616.1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 10563-11133 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 10563 -1113 3 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 11229-11790 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 11229-11790 bp Feature: gene Location: 11830-12843 bp Ori: GAF03617.1 Feature: domain Description: ComA-like_MBL-fold Location: 11836-12568 bp Feature: domain Description: ComA-like_MBL-fold Location: 1183 6-12568 bp Feature: gene Location: 12818-14101 bp Ori: GAF03618.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 13727-14090 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 13 727-14090 bp Feature: gene Location: 14211-15137 bp Ori: GAF03619.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 14214-14337 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 14214-143 3 7 bp Feature: gene Location: 15160-16611 bp Ori: GAF03620.1 Feature: domain Description: PRK14975 Location: 15487-16477 bp Feature: domain Description: PRK14975 Location: 15487-16477 bp Feature: gene Location: 16630-17199 bp Ori: GAF03621.1 Feature: domain Description: DEDDh Location: 16639-17170 bp Feature: domain Description: DEDDh Location: 1663 9-17170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), ComA-like_MBL-fold (cd07731), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), DEDDh (cd06127)

Seq: BAMD01000013.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 DNA, contig: JCM21142.contig00013, whole genome shotgun sequence (89836 bp)
Overview 1 RT 1: 62277-68847 bp Neighborhood of RT #1 [62277, 68858] DUF1735 PKD PKD RVT-GII Glyco_hydro_3 PRK15098 Feature: gene Location: 62277-63182 bp Ori: GAF02778.1 Feature: domain Description: DUF1735 Location: 62361-62727 bp Feature: domain Description: DUF1735 Location: 62361-62727 bp Feature: gene Location: 63287-64801 bp Ori: GAF02779.1 Feature: domain Description: PKD Location: 63512-63659 bp Feature: domain Description: PKD Location: 63512-63659 bp Feature: domain Description: PKD Location: 63794-63926 bp Feature: domain Description: PKD Location: 63794 -63926 bp Feature: gene Location: 65055-65246 bp Ori: GAF02780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65058-65235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65058-65235 bp Feature: gene Location: 65633-66265 bp Ori: GAF02781.1 Feature: domain Description: Glyco_hydro_3 Location: 65843-66224 bp Feature: domain Description: Glyco_hydro_3 Location: 6584 3-66224 bp Feature: gene Location: 66435-68858 bp Ori: GAF02782.1 Feature: domain Description: PRK15098 Location: 66588-68847 bp Feature: domain Description: PRK15098 Location: 66588-6884 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1735 (pfam08522), PKD (smart00089), RVT-GII, Glyco_hydro_3 (pfam00933), PRK15098 (beta-glucosidase BglX)

Seq: BAMD01000144.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 DNA, contig: JCM21142.contig00144, whole genome shotgun sequence (4220 bp)
Overview 1 RT 1: 164-2765 bp Neighborhood of RT #1 [164, 2791] RVT-GII couple_hipB couple_hipA Feature: gene Location: 164-388 bp Feature: gene Location: 690-1043 bp Feature: gene Location: 1092-1436 bp Ori: GAF05878.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098-1251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098-125 1 bp Feature: gene Location: 2251-2463 bp Ori: GAF05879.1 Feature: domain Description: couple_hipB Location: 2260-2428 bp Feature: domain Description: couple_hipB Location: 2260-2428 bp Feature: gene Location: 2456-2791 bp Ori: GAF05880.1 Feature: domain Description: couple_hipA Location: 2471-2765 bp Feature: domain Description: couple_hipA Location: 2471-2765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, couple_hipB (TIGR03070), couple_hipA (TIGR03071)