myRT

myRT report for GCA_000583715.2_ASM58371v2

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Seq: BAWD02000175.1 Nocardia seriolae N-2927 DNA, contig: contig00175, whole genome shotgun sequence (13356 bp)
Overview 1 RT 1: 6576-10187 bp Neighborhood of RT #1 [6576, 10540] Tra8 Tra8 Tra8 PHA02517 RVT-GII YkfC Tra5 Feature: gene Location: 6576-7889 bp Feature: domain Description: Tra8 Location: 6729-6990 bp Feature: domain Description: Tra8 Location: 6729-6990 bp Feature: domain Description: Tra8 Location: 7089-7455 bp Feature: domain Description: Tra8 Location: 7089-7455 bp Feature: domain Description: Tra8 Location: 7521-7854 bp Feature: domain Description: Tra8 Location: 7521 -7854 bp Feature: gene Location: 8066-8311 bp Feature: domain Description: PHA02517 Location: 8075-8279 bp Feature: domain Description: PHA0251 7 Location: 8075-8279 bp Feature: gene Location: 8321-8881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8369-8819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8369-881 9 bp Feature: gene Location: 8878-9162 bp Feature: domain Description: YkfC Location: 8941-9100 bp Feature: domain Description: YkfC Location: 8941 -91 00 bp Feature: gene Location: 9776-10540 bp Feature: domain Description: Tra5 Location: 9782-10187 bp Feature: domain Description: Tra5 Location: 9782-1 01 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), Tra5 (COG2801)

Seq: BAWD02000119.1 Nocardia seriolae N-2927 DNA, contig: contig00119, whole genome shotgun sequence (25498 bp)
Overview 1 RT 1: 26-2770 bp Neighborhood of RT #1 [26, 2850] RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 Feature: gene Location: 26-256 bp Feature: gene Location: 273-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1332 bp Feature: domain Description: Intron_maturas2 Location: 1449-1662 bp Feature: domain Description: Intron_maturas2 Location: 1449-1662 bp Feature: domain Description: HNHc Note: nucleases Location: 1857-2013 bp Feature: domain Description: HNHc Note: nucleases Location: 1857-2 013 bp Feature: gene Location: 1977-2237 bp Feature: gene Location: 2515-2850 bp Feature: domain Description: DDE_Tnp_1 Location: 2521-2770 bp Feature: domain Description: DDE_Tnp_1 Location: 2 52 1-2 770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAWD02000029.1 Nocardia seriolae N-2927 DNA, contig: contig00029, whole genome shotgun sequence (2065 bp)
Overview 1 RT 1: 188-1954 bp Neighborhood of RT #1 [188, 1983] RVT-GII Feature: gene Location: 188-364 bp Feature: gene Location: 1342-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657-1954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657-1954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII