myRT

myRT report for GCA_000583735.1_ASM58373v1

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Seq: BAWF01000051.1 Rhodococcus wratislaviensis NBRC 100605 DNA, contig: RW1051, whole genome shotgun sequence (81216 bp)
Overview 1 RT 1: 35328-40612 bp Neighborhood of RT #1 [35328, 41976] COG3547 RVT-GII GIIM HTH_ARSR Feature: gene Location: 35328-35942 bp Feature: domain Description: COG3547 Location: 35331-35913 bp Feature: domain Description: COG3547 Location: 35331 -3591 3 bp Feature: gene Location: 35891-36172 bp Feature: gene Location: 37941-39266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38205-38835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38205-38835 bp Feature: domain Description: GIIM Note: maturase Location: 38925-39132 bp Feature: domain Description: GIIM Note: maturase Location: 38925-391 32 bp Feature: gene Location: 39241-39576 bp Feature: gene Location: 40165-41976 bp Feature: domain Description: HTH_ARSR Location: 40426-40612 bp Feature: domain Description: HTH_ARSR Location: 40426-4061 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), HTH_ARSR (smart00418)

Seq: BAWF01000062.1 Rhodococcus wratislaviensis NBRC 100605 DNA, contig: RW1062, whole genome shotgun sequence (43825 bp)
Overview 1 RT 1: 23180-27183 bp Neighborhood of RT #1 [23180, 27293] GIIM RVT-GII FACL_FadD13-like DDE_Tnp_ISAZ013 Feature: gene Location: 23180-23452 bp Feature: gene Location: 23477-23827 bp Feature: domain Description: GIIM Note: maturase Location: 23531-23747 bp Feature: domain Description: GIIM Note: maturase Location: 2 3531-2 3747 bp Feature: gene Location: 23898-24134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23901-24108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3901-2 4108 bp Feature: gene Location: 24850-26394 bp Feature: domain Description: FACL_FadD13-like Location: 24946-26308 bp Feature: domain Description: FACL_FadD13-like Location: 2 4946-2 6308 bp Feature: gene Location: 26727-27293 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 26889-27183 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2 6889-2 7183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, FACL_FadD13-like (cd17631), DDE_Tnp_ISAZ013 (pfam07592)

Seq: BAWF01000102.1 Rhodococcus wratislaviensis NBRC 100605 DNA, contig: RW1102, whole genome shotgun sequence (5234 bp)
Overview 1 RT 1: 22-5126 bp Neighborhood of RT #1 [22, 5206] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM COG3547 Feature: gene Location: 22-1137 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 67-379 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 67-3 79 bp Feature: domain Description: Transposase_20 Location: 727-976 bp Feature: domain Description: Transposase_20 Location: 727-976 bp Feature: gene Location: 1357-2787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678-2365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678-23 65 bp Feature: domain Description: GIIM Note: maturase Location: 2437-2665 bp Feature: domain Description: GIIM Note: maturase Location: 243 7-2665 bp Feature: gene Location: 4112-5206 bp Feature: domain Description: COG3547 Location: 4250-5126 bp Feature: domain Description: COG3 547 Location: 4250-5126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: BAWF01000011.1 Rhodococcus wratislaviensis NBRC 100605 DNA, contig: RW1011, whole genome shotgun sequence (215642 bp)
Overview 1 RT 1: 156238-161170 bp Neighborhood of RT #1 [156238, 161205] GlnQ TIGR00004 RVT-Retrons LamB_like GatA Feature: gene Location: 156238-157002 bp Feature: domain Description: GlnQ Location: 156253-156997 bp Feature: domain Description: GlnQ Location: 156253-156997 bp Feature: gene Location: 157062-157460 bp Feature: domain Description: TIGR00004 Location: 157074-157431 bp Feature: domain Description: TIGR00004 Location: 157074 -1574 31 bp Feature: gene Location: 157675-158916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 158092-158680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 158092-158680 bp Feature: gene Location: 158966-159697 bp Feature: domain Description: LamB_like Location: 158978-159674 bp Feature: domain Description: LamB_like Location: 158978-159674 bp Feature: gene Location: 159697-161205 bp Feature: domain Description: GatA Location: 159715-161170 bp Feature: domain Description: GatA Location: 159715-161170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), TIGR00004 (reactive intermediate/imine deaminase), RVT-Retrons, LamB_like (cd11665), GatA (COG0154)