myRT

myRT report for GCA_000584955.2_capsk01v2

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Seq: JDSS02000021.1 Candidatus Accumulibacter sp. SK-01 contig000054, whole genome shotgun sequence (306437 bp)
Overview 1 RT 1: 299626-306065 bp Neighborhood of RT #1 [299626, 306127] TIR_2 RVT-DGRs YfmG Feature: gene Location: 299626-301011 bp Feature: domain Description: TIR_2 Location: 299638-299971 bp Feature: domain Description: TIR_2 Location: 299638-299971 bp Feature: gene Location: 302176-302649 bp Feature: gene Location: 304004-304915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 304316-304712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30431 6-30471 2 bp Feature: gene Location: 304900-305088 bp Feature: gene Location: 305252-306127 bp Feature: domain Description: YfmG Location: 305390-306065 bp Feature: domain Description: YfmG Location: 305390-306065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), RVT-DGRs, YfmG (COG1262)

Seq: JDSS02000032.1 Candidatus Accumulibacter sp. SK-01 contig000084, whole genome shotgun sequence (107748 bp)
Overview 1 RT 1: 12643-15662 bp Neighborhood of RT #1 [12643, 15724] Rhs_assc_core RVT-GII COG2929 BrnA_antitoxin Feature: gene Location: 12643-13473 bp Feature: domain Description: Rhs_assc_core Location: 12793-13033 bp Feature: domain Description: Rhs_assc_core Location: 12 793-13033 bp Feature: gene Location: 13482-14003 bp Feature: gene Location: 14349-15071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14637-15066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14637-15066 bp Feature: gene Location: 15196-15465 bp Feature: domain Description: COG2929 Location: 15199-15454 bp Feature: domain Description: COG2 92 9 Location: 15199-15454 bp Feature: gene Location: 15434-15724 bp Feature: domain Description: BrnA_antitoxin Location: 15485-15662 bp Feature: domain Description: BrnA_antitoxin Location: 15485-15662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, COG2929 (Uncharacterized conserved protein, DUF497 family ), BrnA_antitoxin (pfam14384)

Seq: JDSS02000008.1 Candidatus Accumulibacter sp. SK-01 contig000024, whole genome shotgun sequence (35244 bp)
Overview 1 RT 1: 27354-33145 bp Neighborhood of RT #1 [27354, 33321] MoxR YfmG Hrd RVT-DGRs YfmG Feature: gene Location: 27354-30176 bp Feature: domain Description: MoxR Location: 27441-28017 bp Feature: domain Description: MoxR Location: 27441-28017 bp Feature: domain Description: YfmG Location: 29340-30033 bp Feature: domain Description: YfmG Location: 293 40-3 003 3 bp Feature: gene Location: 30200-30601 bp Feature: domain Description: Hrd Location: 30380-30584 bp Feature: domain Description: Hrd Location: 3 03 80-3 0584 bp Feature: gene Location: 30598-31617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30802-31420 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 0802-3 1420 bp Feature: gene Location: 31487-32206 bp Feature: gene Location: 32656-33321 bp Feature: domain Description: YfmG Location: 32668-33145 bp Feature: domain Description: YfmG Location: 3 2668-3 3 145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs

Seq: JDSS02000019.1 Candidatus Accumulibacter sp. SK-01 contig000045, whole genome shotgun sequence (377969 bp)
Overview 1 RT 1: 81368-85651 bp 2 RT 2: 173367-178989 bp 3 RT 3: 224233-230693 bp 4 RT 4: 251825-257619 bp Neighborhood of RT #1 [81368, 85701] RVT-GII ExeA Neighborhood of RT #2 [173367, 179036] DUF1223 sulP RVT-Retrons Zn_Tnp_IS91 Neighborhood of RT #3 [224233, 230716] COG5635 FGE-sulfatase RVT-DGRs Avd_like pfam03781 Neighborhood of RT #4 [251825, 257702] PRK11072 RVT-GII GIIM Feature: gene Location: 81368-82699 bp Feature: gene Location: 82599-83156 bp Feature: gene Location: 83183-84499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83441-84131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834 4 1-84 131 bp Feature: gene Location: 84710-84910 bp Feature: gene Location: 84907-85701 bp Feature: domain Description: ExeA Location: 84916-85651 bp Feature: domain Description: ExeA Location: 84 916-85651 bp Feature: gene Location: 173367-174173 bp Feature: domain Description: DUF1223 Location: 173481-174105 bp Feature: domain Description: DUF1223 Location: 1734 81-174 105 bp Feature: gene Location: 174412-176076 bp Feature: domain Description: sulP Location: 174424-176038 bp Feature: domain Description: sulP Location: 174 4 24 -176038 bp Feature: gene Location: 176498-177913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177026-177668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177026-177668 bp Feature: gene Location: 178461-178580 bp Feature: gene Location: 178695-179036 bp Feature: domain Description: Zn_Tnp_IS91 Location: 178716-178989 bp Feature: domain Description: Zn_Tnp_IS91 Location: 178716-178989 bp Feature: gene Location: 224233-226428 bp Feature: domain Description: COG5635 Location: 225037-226174 bp Feature: domain Description: COG5635 Location: 225037-226174 bp Feature: gene Location: 226370-227305 bp Feature: domain Description: FGE-sulfatase Location: 226631-227282 bp Feature: domain Description: FGE-sulfatase Location: 226631-227282 bp Feature: gene Location: 227397-228461 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 227595-228300 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 227595-228300 bp Feature: gene Location: 228613-229005 bp Feature: domain Description: Avd_like Location: 228640-228952 bp Feature: domain Description: Avd_like Location: 22864 0-228952 bp Feature: gene Location: 229904-230716 bp Feature: domain Description: pfam03781 Location: 230042-230693 bp Feature: domain Description: pfam03781 Location: 23004 2-230693 bp Feature: gene Location: 251825-254623 bp Feature: domain Description: PRK11072 Location: 251933-254612 bp Feature: domain Description: PRK11072 Location: 251933-254 612 bp Feature: gene Location: 254664-255161 bp Feature: gene Location: 255264-256331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255612-256233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255612-256233 bp Feature: gene Location: 256448-256624 bp Feature: gene Location: 257400-257702 bp Feature: domain Description: GIIM Note: maturase Location: 257409-257619 bp Feature: domain Description: GIIM Note: maturase Location: 2574 09-257619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ExeA (COG3267), DUF1223 (pfam06764), sulP (TIGR00815), RVT-Retrons, Zn_Tnp_IS91 (pfam14319), COG5635 (Predicted NTPase, NACHT family domain ), FGE-sulfatase (pfam03781), RVT-DGRs, Avd_like (cd16376)
pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), PRK11072 (bifunctional adenylyltransferase), GIIM (pfam08388)

Seq: JDSS02000018.1 Candidatus Accumulibacter sp. SK-01 contig000041, whole genome shotgun sequence (308503 bp)
Overview 1 RT 1: 108631-116355 bp 2 RT 2: 127753-135168 bp Neighborhood of RT #1 [108631, 116360] PRK06142 YfmG RVT-DGRs Avd_like YfmG WD40 YfmG RVT-DGRs Avd_like YfmG Neighborhood of RT #2 [127753, 135185] MoxR YfmG RVT-DGRs YfmG Gdt1 Feature: gene Location: 108631-109458 bp Feature: domain Description: PRK06142 Location: 108658-109456 bp Feature: domain Description: PRK06142 Location: 10865 8-10945 6 bp Feature: gene Location: 109937-110938 bp Feature: domain Description: YfmG Location: 110162-110933 bp Feature: domain Description: YfmG Location: 110162-110933 bp Feature: gene Location: 111350-112423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111551-112238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1115 5 1-112238 bp Feature: gene Location: 112407-112802 bp Feature: domain Description: Avd_like Location: 112482-112782 bp Feature: domain Description: Avd_like Location: 112482-112782 bp Feature: gene Location: 112843-113799 bp Feature: domain Description: YfmG Location: 112846-112921 bp Feature: domain Description: YfmG Location: 112846-112921 bp Feature: domain Description: WD40 Location: 112939-113050 bp Feature: domain Description: WD40 Location: 112939-11305 0 bp Feature: domain Description: YfmG Location: 113092-113794 bp Feature: domain Description: YfmG Location: 113092-113794 bp Feature: gene Location: 113830-114903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114031-114724 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114031-114724 bp Feature: gene Location: 114887-115282 bp Feature: domain Description: Avd_like Location: 114962-115262 bp Feature: domain Description: Avd_like Location: 114962-115 262 bp Feature: gene Location: 115323-116360 bp Feature: domain Description: YfmG Location: 115560-116355 bp Feature: domain Description: YfmG Location: 115 5 60-11635 5 bp Feature: gene Location: 127753-128760 bp Feature: domain Description: MoxR Location: 127909-128749 bp Feature: domain Description: MoxR Location: 127909-128749 bp Feature: gene Location: 130307-132526 bp Feature: domain Description: YfmG Location: 131855-132512 bp Feature: domain Description: YfmG Location: 13185 5 -1325 12 bp Feature: gene Location: 132870-133193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 132888-133116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 132888-133116 bp Feature: gene Location: 133348-134301 bp Feature: domain Description: YfmG Location: 133480-134269 bp Feature: domain Description: YfmG Location: 133480-134269 bp Feature: gene Location: 134538-135185 bp Feature: domain Description: Gdt1 Location: 134619-135168 bp Feature: domain Description: Gdt1 Location: 134619-135 168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06142 (crotonase/enoyl-CoA hydratase family protein), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), WD40 (smart00320), MoxR (COG0714), Gdt1 (COG2119)