myRT

myRT report for GCA_000584975.2_capsk02

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Seq: JDST02000051.1 Candidatus Accumulibacter sp. SK-02 contig000060, whole genome shotgun sequence (43369 bp)
Overview 1 RT 1: 21703-26087 bp Neighborhood of RT #1 [21703, 26143] ADP_ribosyl_GH RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 21703-22815 bp Ori: KFB76582.1 Gene: draG_1 Feature: domain Description: ADP_ribosyl_GH Location: 21769-22615 bp Feature: domain Description: ADP_ribosyl_GH Location: 21 769-2261 5 bp Feature: gene Location: 23264-23575 bp Feature: gene Location: 23589-25571 bp Ori: KFB76584.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 23829-24438 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 23829-24438 bp Feature: domain Description: Cas1_I-II-III Location: 24582-25533 bp Feature: domain Description: Cas1 _I-II-III Location: 24582-25533 bp Feature: gene Location: 25578-25862 bp Ori: KFB76585.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 25593-25797 bp Feature: domain Description: Cas2_I_II_III Location: 25593-25797 bp Feature: gene Location: 25859-26143 bp Ori: KFB76586.1 Feature: domain Description: Cas2_I_II_III Location: 25877-26087 bp Feature: domain Description: Cas2_I_II_III Location: 25877-26087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADP_ribosyl_GH (pfam03747), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: JDST02000063.1 Candidatus Accumulibacter sp. SK-02 contig000075, whole genome shotgun sequence (14381 bp)
Overview 1 RT 1: 1967-3941 bp Neighborhood of RT #1 [1967, 4000] BrnT_toxin COG5304 RVT-GII PIN_VapC4-5_FitB-like PhdYeFM_antitox Feature: gene Location: 1967-2260 bp Ori: KFB76120.1 Feature: domain Description: BrnT_toxin Location: 1985-2219 bp Feature: domain Description: BrnT_toxin Location: 1985-2 2 19 bp Feature: gene Location: 2247-2534 bp Ori: KFB76121.1 Feature: domain Description: COG5304 Location: 2286-2496 bp Feature: domain Description: COG5304 Location: 2 2 86-2 496 bp Feature: gene Location: 2570-2806 bp Ori: KFB76122.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711-2798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 711-2 798 bp Feature: gene Location: 3325-3540 bp Ori: KFB76123.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 3343-3523 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 3343-352 3 bp Feature: gene Location: 3743-4000 bp Ori: KFB76124.1 Gene: relF Feature: domain Description: PhdYeFM_antitox Location: 3746-3941 bp Feature: domain Description: PhdYeFM_antitox Location: 3746-3941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnT_toxin (pfam04365), COG5304 (Predicted DNA binding protein, CopG/RHH family ), RVT-GII, PIN_VapC4-5_FitB-like (cd18754), PhdYeFM_antitox (pfam02604)

Seq: JDST02000126.1 Candidatus Accumulibacter sp. SK-02 contig000159, whole genome shotgun sequence (23464 bp)
Overview 1 RT 1: 16824-19689 bp Neighborhood of RT #1 [16824, 20081] L-Ala-D-Glu_peptidase_like RVT-GII SGNH_arylesterase_like Phage_int_SAM_4 INT_IntI_C Feature: gene Location: 16824-17000 bp Feature: gene Location: 16942-17436 bp Ori: KFB74826.1 Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 16975-17290 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 16975-17290 bp Feature: gene Location: 17455-18012 bp Ori: KFB74827.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17458-17674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17458-17674 bp Feature: gene Location: 18247-18897 bp Ori: KFB74828.1 Feature: domain Description: SGNH_arylesterase_like Location: 18256-18871 bp Feature: domain Description: SGNH_arylesterase_like Location: 18256-18871 bp Feature: gene Location: 19092-20081 bp Ori: KFB74829.1 Feature: domain Description: Phage_int_SAM_4 Location: 19134-19365 bp Feature: domain Description: Phage_int_SAM_4 Location: 1913 4-193 65 bp Feature: domain Description: INT_IntI_C Location: 19407-19689 bp Feature: domain Description: INT_IntI_C Location: 19407-19689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L-Ala-D-Glu_peptidase_like (cd14845), RVT-GII, SGNH_arylesterase_like (cd01839), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193)

Seq: JDST02000022.1 Candidatus Accumulibacter sp. SK-02 contig000029, whole genome shotgun sequence (49655 bp)
Overview 1 RT 1: 30465-34239 bp Neighborhood of RT #1 [30465, 34250] PerM RVT-DGRs MutS_I DUF1566 Avd_like Feature: gene Location: 30465-31478 bp Ori: KFB77563.1 Feature: domain Description: PerM Location: 30513-31455 bp Feature: domain Description: PerM Location: 30513-314 55 bp Feature: gene Location: 31614-31850 bp Feature: gene Location: 32024-33535 bp Ori: KFB77565.1 Gene: ltrA_1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32204-32891 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32204 -32891 bp Feature: domain Description: MutS_I Location: 33200-33437 bp Feature: domain Description: MutS_I Location: 33200-334 37 bp Feature: gene Location: 33542-33697 bp Ori: KFB77566.1 Feature: domain Description: DUF1566 Location: 33554-33686 bp Feature: domain Description: DUF1566 Location: 33554 -33686 bp Feature: gene Location: 33900-34250 bp Ori: KFB77567.1 Feature: domain Description: Avd_like Location: 33927-34239 bp Feature: domain Description: Avd_like Location: 33927-34 239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), RVT-DGRs, MutS_I (pfam01624), DUF1566 (pfam07603), Avd_like (cd16376)

Seq: JDST02000058.1 Candidatus Accumulibacter sp. SK-02 contig000067, whole genome shotgun sequence (16861 bp)
Overview 1 RT 1: 43-11579 bp Neighborhood of RT #1 [43, 11602] COG5635 COG5635 pfam03781 COG5635 COG5635 YfmG RVT-DGRs Avd_like Peptidase_C14 COG5635 pfam03781 Feature: gene Location: 43-2397 bp Ori: KFB76293.1 Gene: pkn1_10 Feature: domain Description: COG5635 Location: 49-100 bp Feature: domain Description: COG5 635 Location: 49-100 bp Feature: domain Description: COG5635 Location: 385-1300 bp Feature: domain Description: COG5 635 Location: 385 -1300 bp Feature: domain Description: pfam03781 Location: 1597-2374 bp Feature: domain Description: pfam03781 Location: 15 97-2374 bp Feature: gene Location: 2550-5846 bp Ori: KFB76294.1 Gene: pkn1_11 Feature: domain Description: COG5635 Location: 3462-3567 bp Feature: domain Description: COG5 635 Location: 3462-35 67 bp Feature: domain Description: COG5635 Location: 3777-4338 bp Feature: domain Description: COG5 635 Location: 3777-4338 bp Feature: domain Description: YfmG Location: 5073-5826 bp Feature: domain Description: YfmG Location: 5 073-5 826 bp Feature: gene Location: 5938-7002 bp Ori: KFB76295.1 Gene: ltrA_2 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6136-6784 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6136-6784 bp Feature: gene Location: 7106-7498 bp Ori: KFB76296.1 Feature: domain Description: Avd_like Location: 7133-7445 bp Feature: domain Description: Avd_like Location: 7133-7445 bp Feature: gene Location: 7988-11602 bp Ori: KFB76297.1 Gene: pkn1_12 Feature: domain Description: Peptidase_C14 Location: 8018-8777 bp Feature: domain Description: Peptidase_C14 Location: 8018-8777 bp Feature: domain Description: COG5635 Location: 9314-10556 bp Feature: domain Description: COG5 635 Location: 9314-105 5 6 bp Feature: domain Description: pfam03781 Location: 10934-11579 bp Feature: domain Description: pfam03781 Location: 10934-115 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), Peptidase_C14 (pfam00656)

Seq: JDST02000109.1 Candidatus Accumulibacter sp. SK-02 contig000128, whole genome shotgun sequence (20600 bp)
Overview 1 RT 1: 3293-10640 bp Neighborhood of RT #1 [3293, 10669] MoxR YfmG RVT-DGRs YfmG PRK03735 PRK07609 Feature: gene Location: 3293-4303 bp Ori: KFB75010.1 Feature: domain Description: MoxR Location: 3380-4175 bp Feature: domain Description: MoxR Location: 3380-4175 bp Feature: gene Location: 4300-7113 bp Ori: KFB75011.1 Gene: pkn1_16 Feature: domain Description: YfmG Location: 6274-6967 bp Feature: domain Description: YfmG Location: 6 274-6 96 7 bp Feature: gene Location: 7110-7778 bp Ori: KFB75012.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7191-7428 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7191-7428 bp Feature: gene Location: 7775-8629 bp Ori: KFB75013.1 Gene: pkn1_17 Feature: domain Description: YfmG Location: 7913-8543 bp Feature: domain Description: YfmG Location: 7913-8543 bp Feature: gene Location: 8753-10669 bp Ori: KFB75014.1 Gene: ascD_2 Feature: domain Description: PRK03735 Location: 8846-9380 bp Feature: domain Description: PRK03735 Location: 8846 -9380 bp Feature: domain Description: PRK07609 Location: 9647-10640 bp Feature: domain Description: PRK076 09 Location: 96 47-106 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), YfmG (COG1262), RVT-DGRs, PRK03735 (cytochrome b6; Provisional), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated)

Seq: JDST02000094.1 Candidatus Accumulibacter sp. SK-02 contig000111, whole genome shotgun sequence (1926 bp)
Overview 1 RT 1: 519-1467 bp Neighborhood of RT #1 [519, 1835] RVT-GII Feature: gene Location: 519-1835 bp Ori: KFB75331.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 7 -1467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII