myRT

myRT report for GCA_000584995.1_capsk11

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Seq: JFAW01000011.1 Candidatus Accumulibacter sp. SK-11 contig000011, whole genome shotgun sequence (149581 bp)
Overview 1 RT 1: 140705-143003 bp Neighborhood of RT #1 [140705, 143003] RVT-GII COG3019 Feature: gene Location: 140705-140911 bp Feature: gene Location: 141043-141444 bp Feature: gene Location: 141809-142255 bp Ori: EXI74428.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141938-142028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 938-1 42028 bp Feature: gene Location: 142166-142603 bp Ori: EXI74429.1 Feature: domain Description: COG3019 Location: 142184-142595 bp Feature: domain Description: COG301 9 Location: 1 421 84-1 42595 bp Feature: gene Location: 142614-143003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3019 (Uncharacterized conserved protein )

Seq: JFAW01000059.1 Candidatus Accumulibacter sp. SK-11 contig000059, whole genome shotgun sequence (13663 bp)
Overview 1 RT 1: 9862-13553 bp Neighborhood of RT #1 [9862, 13582] YfmG Avd_like RVT-DGRs FGE-sulfatase Feature: gene Location: 9862-10491 bp Ori: EXI66639.1 Feature: domain Description: YfmG Location: 9865-9970 bp Feature: domain Description: YfmG Location: 9865-9970 bp Feature: gene Location: 10304-10705 bp Ori: EXI66640.1 Feature: domain Description: Avd_like Location: 10331-10643 bp Feature: domain Description: Avd_like Location: 10331-10643 bp Feature: gene Location: 10809-11870 bp Ori: EXI66641.1 Gene: ltrA_4 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11007-11697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11007-11697 bp Feature: gene Location: 11960-13582 bp Ori: EXI66642.1 Gene: pkn1_9 Feature: domain Description: FGE-sulfatase Location: 12884-13553 bp Feature: domain Description: FGE-sulfatase Location: 12 884-13553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, FGE-sulfatase (pfam03781)

Seq: JFAW01000013.1 Candidatus Accumulibacter sp. SK-11 contig000013, whole genome shotgun sequence (188708 bp)
Overview 1 RT 1: 149680-155281 bp Neighborhood of RT #1 [149680, 155448] YfmG YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 149680-150627 bp Ori: EXI73777.1 Gene: pkn1_3 Feature: domain Description: YfmG Location: 149818-150484 bp Feature: domain Description: YfmG Location: 149818-150484 bp Feature: gene Location: 150640-150960 bp Ori: EXI73778.1 Feature: domain Description: YfmG Location: 150664-150826 bp Feature: domain Description: YfmG Location: 150664-150826 bp Feature: gene Location: 150957-151970 bp Ori: EXI73779.1 Gene: ltrA_3 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 151155-151767 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 151155-151767 bp Feature: gene Location: 152012-152518 bp Ori: EXI73780.1 Gene: recQ_2 Feature: domain Description: Hrd Location: 152252-152462 bp Feature: domain Description: Hrd Location: 152252-152462 bp Feature: gene Location: 152527-155448 bp Ori: EXI73781.1 Gene: pkn1_4 Feature: domain Description: YfmG Location: 154615-155281 bp Feature: domain Description: YfmG Location: 154615-155281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: JFAW01000005.1 Candidatus Accumulibacter sp. SK-11 contig000005, whole genome shotgun sequence (178595 bp)
Overview 1 RT 1: 116743-118630 bp Neighborhood of RT #1 [116743, 118788] Xcc1710_like CE4_ArnD RVT-GII GIIM Feature: gene Location: 116743-117114 bp Ori: EXI75714.1 Feature: domain Description: Xcc1710_like Location: 116782-117106 bp Feature: domain Description: Xcc1710_like Location: 116782-117106 bp Feature: gene Location: 117169-118071 bp Ori: EXI75715.1 Gene: arnD Feature: domain Description: CE4_ArnD Location: 117178-118009 bp Feature: domain Description: CE4 _ArnD Location: 117178-118009 bp Feature: gene Location: 118132-118788 bp Ori: EXI75716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118135-118369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118135-118369 bp Feature: domain Description: GIIM Note: maturase Location: 118432-118630 bp Feature: domain Description: GIIM Note: maturase Location: 1184 32-118630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Xcc1710_like (cd05560), CE4_ArnD (cd10939), RVT-GII, GIIM (pfam08388)

Seq: JFAW01000002.1 Candidatus Accumulibacter sp. SK-11 contig000002, whole genome shotgun sequence (226854 bp)
Overview 1 RT 1: 220204-225326 bp Neighborhood of RT #1 [220204, 225326] PRK09601 SGNH_hydrolase RVT-GII Feature: gene Location: 220204-220749 bp Ori: EXI76563.1 Gene: ychF Feature: domain Description: PRK09601 Location: 220213-220747 bp Feature: domain Description: PRK09601 Location: 220213-220747 bp Feature: gene Location: 221170-221970 bp Ori: EXI76564.1 Feature: domain Description: SGNH_hydrolase Location: 221236-221926 bp Feature: domain Description: SGNH_hydrolase Location: 221236-221926 bp Feature: gene Location: 221967-222827 bp Ori: EXI76565.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222279-222504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222279-2225 04 bp Feature: gene Location: 223504-224622 bp Feature: gene Location: 224748-225326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09601 (redox-regulated ATPase YchF), SGNH_hydrolase (cl01053), RVT-GII