myRT

myRT report for GCA_000585015.1_capsk12

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Seq: JFAX01000017.1 Candidatus Accumulibacter sp. SK-12 contig000017, whole genome shotgun sequence (103062 bp)
Overview 1 RT 1: 17747-20709 bp Neighborhood of RT #1 [17747, 20843] COG3019 RVT-GII PIN_VapC-like E_set_AMPKbeta_like_N Feature: gene Location: 17747-18136 bp Feature: gene Location: 18147-18584 bp Ori: EXI66007.1 Feature: domain Description: COG3019 Location: 18162-18576 bp Feature: domain Description: COG301 9 Location: 1 81 62-1 8576 bp Feature: gene Location: 18495-18941 bp Ori: EXI66008.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18624-18714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8624-1 871 4 bp Feature: gene Location: 20191-20364 bp Ori: EXI66009.1 Feature: domain Description: PIN_VapC-like Location: 20194-20284 bp Feature: domain Description: PIN_VapC-like Location: 201 94-20284 bp Feature: gene Location: 20319-20843 bp Ori: EXI66010.1 Feature: domain Description: E_set_AMPKbeta_like_N Location: 20550-20709 bp Feature: domain Description: E_set_AMPKbeta_like_N Location: 20550-20709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3019 (Uncharacterized conserved protein ), RVT-GII, PIN_VapC-like (cd18715), E_set_AMPKbeta_like_N (cd02859)

Seq: JFAX01000020.1 Candidatus Accumulibacter sp. SK-12 contig000020, whole genome shotgun sequence (92533 bp)
Overview 1 RT 1: 69039-71143 bp Neighborhood of RT #1 [69039, 71217] RVT-Retrons HsdM STAS Feature: gene Location: 69039-69278 bp Feature: gene Location: 69440-69646 bp Feature: gene Location: 69612-70562 bp Ori: EXI65661.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69762-70326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69762 -7032 6 bp Feature: gene Location: 70786-70917 bp Ori: EXI65662.1 Feature: domain Description: HsdM Location: 70807-70915 bp Feature: domain Description: HsdM Location: 70807-70915 bp Feature: gene Location: 71002-71217 bp Ori: EXI65663.1 Feature: domain Description: STAS Location: 71008-71143 bp Feature: domain Description: STAS Location: 71008-71143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HsdM (COG0286), STAS (pfam01740)