myRT

myRT report for GCA_000585035.2_AW09v2

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Seq: JDVG02000263.1 Candidatus Accumulibacter sp. BA-91 contig000275, whole genome shotgun sequence (3613 bp)
Overview 1 RT 1: 2041-3333 bp Neighborhood of RT #1 [2041, 3428] INT_RitC_C_like RVT-GII Feature: gene Location: 2041-2364 bp Feature: gene Location: 2751-3188 bp Ori: KFB73213.1 Gene: xerC_3 Feature: domain Description: INT_RitC_C_like Location: 2847-3072 bp Feature: domain Description: INT_RitC_C_like Location: 2847-3072 bp Feature: gene Location: 3225-3428 bp Ori: KFB73214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3231-3333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3231 -3333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), RVT-GII

Seq: JDVG02000635.1 Candidatus Accumulibacter sp. BA-91 contig000672, whole genome shotgun sequence (9835 bp)
Overview 1 RT 1: 331-2667 bp Neighborhood of RT #1 [331, 2681] YfmG RVT-DGRs Avd_like Feature: gene Location: 331-831 bp Ori: KFB70850.1 Gene: pkn1_9 Feature: domain Description: YfmG Location: 412-811 bp Feature: domain Description: YfmG Location: 412 -811 bp Feature: gene Location: 955-1953 bp Ori: KFB70851.1 Gene: ltrA_3 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1168-1813 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1168-1813 bp Feature: gene Location: 2111-2290 bp Feature: gene Location: 2334-2681 bp Ori: KFB70853.1 Feature: domain Description: Avd_like Location: 2439-2667 bp Feature: domain Description: Avd_like Location: 2 439-2 667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JDVG02000521.1 Candidatus Accumulibacter sp. BA-91 contig000550, whole genome shotgun sequence (11447 bp)
Overview 1 RT 1: 506-6978 bp Neighborhood of RT #1 [506, 7250] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III CSP_CDS TIGR03986 TIGR03986 Feature: gene Location: 506-787 bp Ori: KFB71593.1 Feature: domain Description: Cas2_I_II_III Location: 527-719 bp Feature: domain Description: Cas2_I_II_III Location: 527-719 bp Feature: gene Location: 780-3422 bp Ori: KFB71594.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1740-2358 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1740-23 58 bp Feature: domain Description: Cas1_I-II-III Location: 2442-3372 bp Feature: domain Description: Cas1_I-II-III Location: 2442-3 3 72 bp Feature: gene Location: 3435-5099 bp Feature: gene Location: 5124-7250 bp Ori: KFB71596.1 Feature: domain Description: CSP_CDS Location: 5133-5322 bp Feature: domain Description: CSP_CDS Location: 513 3 -53 22 bp Feature: domain Description: TIGR03986 Location: 5418-5796 bp Feature: domain Description: TIGR03 986 Location: 5418-5796 bp Feature: domain Description: TIGR03986 Location: 5949-6978 bp Feature: domain Description: TIGR03 986 Location: 5949-6978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), CSP_CDS (cd04458), TIGR03986 (CRISPR-associated protein)

Seq: JDVG02000021.1 Candidatus Accumulibacter sp. BA-91 contig000023, whole genome shotgun sequence (10259 bp)
Overview 1 RT 1: 21-3678 bp Neighborhood of RT #1 [21, 3678] Phage_int_SAM_4 RVT-GII H2MP_NAD-link-bidir Feature: gene Location: 21-251 bp Ori: KFB74522.1 Feature: domain Description: Phage_int_SAM_4 Location: 69-246 bp Feature: domain Description: Phage_int_SAM_4 Location: 69-24 6 bp Feature: gene Location: 1086-2333 bp Ori: KFB74523.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290-1971 bp Feature: gene Location: 2639-3148 bp Ori: KFB74524.1 Feature: domain Description: H2MP_NAD-link-bidir Location: 2660-3098 bp Feature: domain Description: H2MP_NAD-link-bidir Location: 2660-3098 bp Feature: gene Location: 3511-3678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), RVT-GII, H2MP_NAD-link-bidir (cd06066)