myRT

myRT report for GCA_000585055.1_capba92

Download annotations/find similar RTs

Seq: JEMX01000045.1 Candidatus Accumulibacter sp. BA-92 contig000045, whole genome shotgun sequence (83951 bp)
Overview 1 RT 1: 3818-13259 bp Neighborhood of RT #1 [3818, 13297] COG5635 pfam03781 Avd_like RVT-DGRs COG5635 pfam03781 PaaI_thioesterase Feature: gene Location: 3818-6964 bp Ori: EXI79840.1 Gene: pkn1_6 Feature: domain Description: COG5635 Location: 4616-5750 bp Feature: domain Description: COG5635 Location: 461 6-5750 bp Feature: domain Description: pfam03781 Location: 6254-6941 bp Feature: domain Description: pfam03781 Location: 6254-6941 bp Feature: gene Location: 7500-7904 bp Ori: EXI79841.1 Feature: domain Description: Avd_like Location: 7527-7839 bp Feature: domain Description: Avd_like Location: 7527-7839 bp Feature: gene Location: 8069-9130 bp Ori: EXI79842.1 Gene: ltrA_2 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8267-8981 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8267-8981 bp Feature: gene Location: 9455-12562 bp Ori: EXI79843.1 Gene: pkn1_7 Feature: domain Description: COG5635 Location: 10151-11480 bp Feature: domain Description: COG5635 Location: 1 01 51 -1 1 480 bp Feature: domain Description: pfam03781 Location: 11915-12539 bp Feature: domain Description: pfam03781 Location: 1 1 91 5-1 2539 bp Feature: gene Location: 12812-13297 bp Ori: EXI79844.1 Feature: domain Description: PaaI_thioesterase Location: 12920-13259 bp Feature: domain Description: PaaI_thioesterase Location: 1 2920-1 3259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, PaaI_thioesterase (cd03443)

Seq: JEMX01000015.1 Candidatus Accumulibacter sp. BA-92 contig000015, whole genome shotgun sequence (50400 bp)
Overview 1 RT 1: 149-6214 bp Neighborhood of RT #1 [149, 6228] PEP-CTERM RVT-GII Methyltransf_11 dCache_1 GAF CHD Feature: gene Location: 149-454 bp Feature: gene Location: 702-1385 bp Ori: EXI81917.1 Feature: domain Description: PEP-CTERM Location: 1305-1374 bp Feature: domain Description: PEP-CTERM Location: 1305-1374 bp Feature: gene Location: 1978-2571 bp Ori: EXI81918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173-2335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 173-2 335 bp Feature: gene Location: 2608-3363 bp Ori: EXI81919.1 Feature: domain Description: Methyltransf_11 Location: 2701-2944 bp Feature: domain Description: Methyltransf_11 Location: 2 701-2 944 bp Feature: gene Location: 3790-6228 bp Ori: EXI81920.1 Gene: cya_1 Feature: domain Description: dCache_1 Location: 4093-4828 bp Feature: domain Description: dCache_1 Location: 4093-482 8 bp Feature: domain Description: GAF Location: 5086-5479 bp Feature: domain Description: GAF Location: 5086-5479 bp Feature: domain Description: CHD Location: 5755-6214 bp Feature: domain Description: CHD Location: 5755-62 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-GII, Methyltransf_11 (pfam08241), dCache_1 (pfam02743), GAF (smart00065), CHD (cd07302)

Seq: JEMX01000009.1 Candidatus Accumulibacter sp. BA-92 contig000009, whole genome shotgun sequence (78540 bp)
Overview 1 RT 1: 57630-64535 bp Neighborhood of RT #1 [57630, 64750] PEP-CTERM YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 57630-58679 bp Ori: EXI82852.1 Feature: domain Description: PEP-CTERM Location: 58590-58656 bp Feature: domain Description: PEP-CTERM Location: 58590-58656 bp Feature: gene Location: 59134-60036 bp Ori: EXI82853.1 Gene: pkn1_2 Feature: domain Description: YfmG Location: 59293-59959 bp Feature: domain Description: YfmG Location: 59293 -59959 bp Feature: gene Location: 60373-61401 bp Ori: EXI82854.1 Gene: ltrA_1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60580-61195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60580-61195 bp Feature: gene Location: 61412-61882 bp Ori: EXI82855.1 Gene: recQ_1 Feature: domain Description: Hrd Location: 61667-61871 bp Feature: domain Description: Hrd Location: 61667-61871 bp Feature: gene Location: 61919-64750 bp Ori: EXI82856.1 Gene: pkn1_3 Feature: domain Description: YfmG Location: 63869-64535 bp Feature: domain Description: YfmG Location: 63 869-6453 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: JEMX01000119.1 Candidatus Accumulibacter sp. BA-92 contig000119, whole genome shotgun sequence (5937 bp)
Overview 1 RT 1: 753-5478 bp Neighborhood of RT #1 [753, 5846] DDE_Tnp_1_assoc RVT-GII Feature: gene Location: 753-2273 bp Ori: EXI77087.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 996-1254 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 996-1254 bp Feature: gene Location: 2715-4046 bp Feature: gene Location: 4530-5846 bp Ori: EXI77089.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4788-5478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 788-54 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII

Seq: JEMX01000149.1 Candidatus Accumulibacter sp. BA-92 contig000149, whole genome shotgun sequence (5748 bp)
Overview 1 RT 1: 128-3086 bp Neighborhood of RT #1 [128, 3772] RVT-GII GIIM IstB_IS21 COG4584 Feature: gene Location: 128-1495 bp Ori: EXI76918.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1076 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1337 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1337 bp Feature: gene Location: 2115-2885 bp Ori: EXI76919.1 Feature: domain Description: IstB_IS21 Location: 2286-2811 bp Feature: domain Description: IstB_IS21 Location: 2286-2811 bp Feature: gene Location: 2882-3772 bp Ori: EXI76920.1 Feature: domain Description: COG4584 Location: 2888-3086 bp Feature: domain Description: COG45 84 Location: 2888-3086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: JEMX01000104.1 Candidatus Accumulibacter sp. BA-92 contig000104, whole genome shotgun sequence (16093 bp)
Overview 1 RT 1: 243-6019 bp Neighborhood of RT #1 [243, 6030] pfam03781 pfam03781 Avd_like RVT-DGRs cztS_silS_copS OmpR Feature: gene Location: 243-1106 bp Ori: EXI77308.1 Gene: pkn1_9 Feature: domain Description: pfam03781 Location: 249-402 bp Feature: domain Description: pfam03781 Location: 249-402 bp Feature: domain Description: pfam03781 Location: 582-1026 bp Feature: domain Description: pfam03781 Location: 582-1026 bp Feature: gene Location: 1664-1966 bp Ori: EXI77309.1 Feature: domain Description: Avd_like Location: 1670-1946 bp Feature: domain Description: Avd_like Location: 16 70-1946 bp Feature: gene Location: 1992-3152 bp Ori: EXI77310.1 Gene: ltrA_3 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2265-2970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 226 5-2970 bp Feature: gene Location: 3245-5329 bp Ori: EXI77311.1 Gene: senX3 Feature: domain Description: cztS_silS_copS Location: 3311-4598 bp Feature: domain Description: cztS_silS_copS Location: 3311-4598 bp Feature: gene Location: 5326-6030 bp Ori: EXI77312.1 Gene: regX3_2 Feature: domain Description: OmpR Location: 5338-6019 bp Feature: domain Description: OmpR Location: 5338-6 019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, cztS_silS_copS (TIGR01386), OmpR (COG0745)