myRT

myRT report for GCA_000585215.1_Thiorhodococcus_sp.

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Seq: AONC01000057.1 Imhoffiella purpurea strain AK35 contig57, whole genome shotgun sequence (58387 bp)
Overview 1 RT 1: 43799-49032 bp Neighborhood of RT #1 [43799, 49079] HAD-SF-IB-hyp1 COG2865 RVT-Retrons C-C_Bond_Lyase HAD_like Feature: gene Location: 43799-44410 bp Ori: EXJ13794.1 Feature: domain Description: HAD-SF-IB-hyp1 Location: 43829-44402 bp Feature: domain Description: HAD-SF-IB-hyp1 Location: 43829-44402 bp Feature: gene Location: 44542-45789 bp Ori: EXJ13795.1 Feature: domain Description: COG2865 Location: 44566-45724 bp Feature: domain Description: COG2865 Location: 44566-45724 bp Feature: gene Location: 45802-47172 bp Ori: EXJ13796.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46264-46888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46264-46888 bp Feature: gene Location: 47435-48304 bp Ori: EXJ13797.1 Feature: domain Description: C-C_Bond_Lyase Location: 47444-48293 bp Feature: domain Description: C-C_Bond_Lyase Location: 47444-48293 bp Feature: gene Location: 48321-49079 bp Ori: EXJ13798.1 Feature: domain Description: HAD_like Location: 48333-49032 bp Feature: domain Description: HAD_like Location: 48333-49032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD-SF-IB-hyp1 (TIGR01490), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-Retrons, C-C_Bond_Lyase (pfam15617), HAD_like (cl21460)

Seq: AONC01000044.1 Imhoffiella purpurea strain AK35 contig44, whole genome shotgun sequence (26065 bp)
Overview 1 RT 1: 13334-17904 bp Neighborhood of RT #1 [13334, 17904] Uma2 HTH_23 RVT-UG9 Feature: gene Location: 13334-13759 bp Ori: EXJ14276.1 Feature: domain Description: Uma2 Location: 13352-13724 bp Feature: domain Description: Uma2 Location: 13352 -1372 4 bp Feature: gene Location: 13832-14371 bp Ori: EXJ14277.1 Feature: domain Description: HTH_23 Location: 13934-14024 bp Feature: domain Description: HTH_2 3 Location: 13934-1402 4 bp Feature: gene Location: 15239-16924 bp Ori: EXJ14278.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 15443-16061 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 15443-16061 bp Feature: gene Location: 16989-17189 bp Feature: gene Location: 17398-17904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), HTH_23 (pfam13384), RVT-UG9

Seq: AONC01000040.1 Imhoffiella purpurea strain AK35 contig40, whole genome shotgun sequence (192456 bp)
Overview 1 RT 1: 77958-82798 bp Neighborhood of RT #1 [77958, 82806] ABC_drug_resistance_like RVT-GII RVT-GII integrase_gron ligand_gated_channel TonB-hemlactrns Feature: gene Location: 77958-78845 bp Ori: EXJ14459.1 Feature: domain Description: ABC_drug_resistance_like Location: 77979-78615 bp Feature: domain Description: ABC_drug_resistance_like Location: 77979-78615 bp Feature: gene Location: 79105-79548 bp Feature: gene Location: 79685-80098 bp Ori: EXJ14461.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79694-79826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79694-79826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79898-80066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79898-80066 bp Feature: gene Location: 80070-80492 bp Ori: EXJ14462.1 Feature: domain Description: integrase_gron Location: 80079-80490 bp Feature: domain Description: integrase_gron Location: 80079-80490 bp Feature: gene Location: 80740-82806 bp Ori: EXJ14463.1 Feature: domain Description: ligand_gated_channel Location: 80872-81691 bp Feature: domain Description: ligand_gated_channel Location: 80872-81691 bp Feature: domain Description: TonB-hemlactrns Location: 81850-82798 bp Feature: domain Description: TonB-hemlactrns Location: 81850-82798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_drug_resistance_like (cd03264), RVT-GII, integrase_gron (TIGR02249), ligand_gated_channel (cd01347), TonB-hemlactrns (TIGR01786)

Seq: AONC01000032.1 Imhoffiella purpurea strain AK35 contig32, whole genome shotgun sequence (5206 bp)
Overview 1 RT 1: 1542-4071 bp Neighborhood of RT #1 [1542, 4442] Nuc_deoxyrib_tr RVT-GII Feature: gene Location: 1542-2474 bp Ori: EXJ14963.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2220-2355 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2220-2355 bp Feature: gene Location: 3117-4442 bp Ori: EXJ14964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3402-4071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 02-4 071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-GII