myRT

myRT report for GCA_000586195.1_ATCC_35251

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Seq: JFIG01000027.1 Legionella pneumophila subsp. fraseri strain ATCC 35251 contig027, whole genome shotgun sequence (65833 bp)
Overview 1 RT 1: 54010-58943 bp Neighborhood of RT #1 [54010, 58957] Tra_M RVT_N RVT-GII GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 NTP-PPase_MazG_Cterm Feature: gene Location: 54010-54384 bp Feature: domain Description: Tra_M Location: 54058-54253 bp Feature: domain Description: Tra_M Location: 54058-54253 bp Feature: gene Location: 54844-54996 bp Feature: gene Location: 55232-56752 bp Feature: domain Description: RVT_N Location: 55289-55532 bp Feature: domain Description: RVT_N Location: 55289-55532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55577-56201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55577-56201 bp Feature: domain Description: GIIM Note: maturase Location: 56252-56486 bp Feature: domain Description: GIIM Note: maturase Location: 56252-56486 bp Feature: gene Location: 56823-58274 bp Feature: domain Description: Tnp_DNA_bind Location: 56862-57030 bp Feature: domain Description: Tnp_DNA_bind Location: 56862-57030 bp Feature: domain Description: DDE_Tnp_1 Location: 57687-57981 bp Feature: domain Description: DDE_Tnp_1 Location: 57687-57981 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 57987-58266 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 57987-58266 bp Feature: gene Location: 58580-58957 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 58607-58943 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 58607-58943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra_M (pfam05261), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), NTP-PPase_MazG_Cterm (cd11529)

Seq: JFIG01000029.1 Legionella pneumophila subsp. fraseri strain ATCC 35251 contig029, whole genome shotgun sequence (59068 bp)
Overview 1 RT 1: 35203-39035 bp Neighborhood of RT #1 [35203, 39154] RVT-UG18 COG5421 Feature: gene Location: 35203-35358 bp Feature: gene Location: 35771-36820 bp Feature: gene Location: 36987-37841 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 37056-37638 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 37056-37638 bp Feature: gene Location: 37866-38063 bp Feature: gene Location: 38060-39154 bp Feature: domain Description: COG5421 Location: 38243-39035 bp Feature: domain Description: COG542 1 Location: 382 43-39035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, COG5421 (Transposase )

Seq: JFIG01000040.1 Legionella pneumophila subsp. fraseri strain ATCC 35251 contig040, whole genome shotgun sequence (26450 bp)
Overview 1 RT 1: 2533-10141 bp Neighborhood of RT #1 [2533, 10141] RVT-GII GIIM Feature: gene Location: 2533-3891 bp Feature: gene Location: 3999-4910 bp Feature: gene Location: 5158-6396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5356-6013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 56-6013 bp Feature: domain Description: GIIM Note: maturase Location: 6094-6304 bp Feature: domain Description: GIIM Note: maturase Location: 6094-63 04 bp Feature: gene Location: 7134-8483 bp Feature: gene Location: 8726-10141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JFIG01000015.1 Legionella pneumophila subsp. fraseri strain ATCC 35251 contig015, whole genome shotgun sequence (131493 bp)
Overview 1 RT 1: 128479-131438 bp Neighborhood of RT #1 [128479, 131476] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM PHA02517 Feature: gene Location: 128479-129039 bp Feature: domain Description: HTH_23 Location: 128566-128689 bp Feature: domain Description: HTH_23 Location: 128566-128689 bp Feature: domain Description: HTH_33 Location: 128782-128947 bp Feature: domain Description: HTH_33 Location: 128782-12894 7 bp Feature: gene Location: 129129-129422 bp Feature: domain Description: InsE Location: 129138-129402 bp Feature: domain Description: InsE Location: 129138-1294 02 bp Feature: gene Location: 129959-131113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130163-130361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130163-130361 bp Feature: domain Description: RVT_1 Location: 130415-130733 bp Feature: domain Description: RVT_1 Location: 1304 15-130733 bp Feature: domain Description: GIIM Note: maturase Location: 130811-131030 bp Feature: domain Description: GIIM Note: maturase Location: 130811-131030 bp Feature: gene Location: 131219-131476 bp Feature: domain Description: PHA02517 Location: 131222-131438 bp Feature: domain Description: PHA02517 Location: 131222-1314 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)