myRT

myRT report for GCA_000586315.1_ATCC_33156

Download annotations/find similar RTs

Seq: JFIM01000029.1 Legionella pneumophila subsp. fraseri strain ATCC 33156 contig029, whole genome shotgun sequence (65297 bp)
Overview 1 RT 1: 6824-11282 bp Neighborhood of RT #1 [6824, 11282] Avd_like DUF1566 RVT-DGRs DUF772 Feature: gene Location: 6824-7177 bp Feature: domain Description: Avd_like Location: 6851-7157 bp Feature: domain Description: Avd_like Location: 6851 -71 57 bp Feature: gene Location: 7202-7483 bp Feature: domain Description: DUF1566 Location: 7262-7442 bp Feature: domain Description: DUF1 566 Location: 7262-7442 bp Feature: gene Location: 7516-8715 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7735-8431 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7735-8431 bp Feature: gene Location: 8734-10194 bp Feature: domain Description: DUF772 Location: 8917-9109 bp Feature: domain Description: DUF772 Location: 891 7-91 09 bp Feature: gene Location: 10275-11282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, DUF772 (pfam05598)

Seq: JFIM01000049.1 Legionella pneumophila subsp. fraseri strain ATCC 33156 contig049, whole genome shotgun sequence (8124 bp)
Overview 1 RT 1: 3981-8080 bp Neighborhood of RT #1 [3981, 8080] RVT-UG18 Feature: gene Location: 3981-4124 bp Feature: gene Location: 4395-5408 bp Feature: gene Location: 5906-6271 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 5909-6269 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 5909-62 69 bp Feature: gene Location: 6293-6595 bp Feature: gene Location: 6749-8080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: KK074229.1 Legionella pneumophila subsp. fraseri strain ATCC 33156 genomic scaffold Scaffold7, whole genome shotgun sequence (131587 bp)
Overview 1 RT 1: 128589-131542 bp Neighborhood of RT #1 [128589, 131568] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM PHA02517 Feature: gene Location: 128589-129149 bp Feature: domain Description: HTH_23 Location: 128676-128799 bp Feature: domain Description: HTH_23 Location: 128676-128799 bp Feature: domain Description: HTH_33 Location: 128892-129057 bp Feature: domain Description: HTH_3 3 Location: 128892-129057 bp Feature: gene Location: 129239-129532 bp Feature: domain Description: InsE Location: 129248-129512 bp Feature: domain Description: InsE Location: 129248-129512 bp Feature: gene Location: 130069-131223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130273-130471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 0273 -13 0471 bp Feature: domain Description: RVT_1 Location: 130525-130843 bp Feature: domain Description: RVT_1 Location: 13 0525-13 0843 bp Feature: domain Description: GIIM Note: maturase Location: 130921-131140 bp Feature: domain Description: GIIM Note: maturase Location: 13 0921-13 1140 bp Feature: gene Location: 131329-131568 bp Feature: domain Description: PHA02517 Location: 131332-131542 bp Feature: domain Description: PHA02517 Location: 13 13 3 2-13 1542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)