myRT

myRT report for GCA_000586515.1_E.coliLR09v1

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Seq: JDVF01000001.1 Escherichia coli LR09 LR09_c1, whole genome shotgun sequence (197243 bp)
Overview 1 RT 1: 157377-161259 bp Neighborhood of RT #1 [157377, 161264] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 157377-158093 bp Feature: domain Description: rph Location: 157380-158088 bp Feature: domain Description: rph Location: 1 57380-1 58088 bp Feature: gene Location: 158144-158800 bp Feature: domain Description: pyrE Location: 158162-158795 bp Feature: domain Description: pyrE Location: 1 581 62-1 58795 bp Feature: gene Location: 159098-160057 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159233-159782 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 59233-1 59782 bp Feature: gene Location: 160103-160699 bp Feature: domain Description: slmA Location: 160109-160685 bp Feature: domain Description: slmA Location: 1 601 09-1 60685 bp Feature: gene Location: 160806-161264 bp Feature: domain Description: dut Location: 160812-161259 bp Feature: domain Description: dut Location: 1 6081 2-1 61 259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JDVF01000012.1 Escherichia coli LR09 LR09_c12, whole genome shotgun sequence (101514 bp)
Overview 1 RT 1: 17568-21851 bp Neighborhood of RT #1 [17568, 21859] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 17568-18473 bp Feature: gene Location: 18731-18928 bp Feature: gene Location: 18959-19498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19289-19367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 89-19367 bp Feature: gene Location: 19526-20047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19532-19814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19532 -19814 bp Feature: domain Description: GIIM Note: maturase Location: 19862-20042 bp Feature: domain Description: GIIM Note: maturase Location: 19862 -2 0042 bp Feature: gene Location: 20369-20557 bp Feature: gene Location: 20597-21859 bp Feature: domain Description: YesM Location: 21110-21851 bp Feature: domain Description: YesM Location: 2 1110-2 1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JDVF01000023.1 Escherichia coli LR09 LR09_c26, whole genome shotgun sequence (162111 bp)
Overview 1 RT 1: 122827-126827 bp Neighborhood of RT #1 [122827, 126835] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 122827-124188 bp Feature: domain Description: DcuC Location: 122830-124162 bp Feature: domain Description: DcuC Location: 12283 0-124162 bp Feature: gene Location: 124241-124612 bp Feature: gene Location: 124834-125280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125140-125242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125140-125242 bp Feature: gene Location: 125328-125477 bp Feature: gene Location: 125804-126835 bp Feature: domain Description: Asparaginase_2 Location: 125894-126827 bp Feature: domain Description: Asparaginase_2 Location: 125894-126827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: JDVF01000121.1 Escherichia coli LR09 plasmid unnamed_3 LR09_c16, whole genome shotgun sequence (75463 bp)
Overview 1 RT 1: 21309-25441 bp Neighborhood of RT #1 [21309, 25441] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 21309-21542 bp Feature: domain Description: DUF905 Location: 21339-21537 bp Feature: domain Description: DUF905 Location: 21339-21537 bp Feature: gene Location: 21605-22057 bp Feature: domain Description: PRK13732 Location: 21611-22055 bp Feature: domain Description: PRK13732 Location: 21611-22055 bp Feature: gene Location: 22252-24153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22519-23350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22519-23350 bp Feature: domain Description: Intron_maturas2 Location: 23464-23722 bp Feature: domain Description: Intron_maturas2 Location: 234 64 -23722 bp Feature: domain Description: HNHc Note: nucleases Location: 23896-24058 bp Feature: domain Description: HNHc Note: nucleases Location: 23896-24 058 bp Feature: gene Location: 24870-25106 bp Feature: gene Location: 25175-25441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)