myRT

myRT report for GCA_000598145.1_ASM59814v1

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Seq: JGCO01000258.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.259, whole genome shotgun sequence (111983 bp)
Overview 1 RT 1: 44465-53424 bp Neighborhood of RT #1 [44465, 53432] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 44465-46654 bp Feature: domain Description: GlnA3 Location: 44540-46652 bp Feature: domain Description: GlnA3 Location: 44540-46652 bp Feature: gene Location: 46957-49113 bp Feature: gene Location: 49320-50432 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49635-50184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49635-501 84 bp Feature: gene Location: 50574-52367 bp Feature: domain Description: rpsA Location: 50652-52260 bp Feature: domain Description: rpsA Location: 50652-52260 bp Feature: gene Location: 52518-53432 bp Feature: domain Description: RNase_Z Location: 52533-53424 bp Feature: domain Description: RNase_Z Location: 52533-53424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCO01000100.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.100, whole genome shotgun sequence (30942 bp)
Overview 1 RT 1: 1-3336 bp 2 RT 2: 18633-22173 bp Neighborhood of RT #1 [1, 3416] RVT_N RVT-GII GIIM RNA_pol_A_CTD Neighborhood of RT #2 [18633, 22187] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 1-1323 bp Feature: RT Description: RVT_N Location: 55-298 bp Feature: RT Description: RVT_N Location: 55-2 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-988 bp Feature: domain Description: GIIM Note: maturase Location: 1039-1273 bp Feature: domain Description: GIIM Note: maturase Location: 1039-12 73 bp Feature: gene Location: 1944-2675 bp Feature: gene Location: 2679-3416 bp Feature: domain Description: RNA_pol_A_CTD Location: 3153-3336 bp Feature: domain Description: RNA_pol_A_CTD Location: 3153-3336 bp Feature: gene Location: 18633-18926 bp Feature: domain Description: DUF4133 Location: 18672-18852 bp Feature: domain Description: DUF4133 Location: 18672 -18852 bp Feature: gene Location: 18940-19062 bp Feature: domain Description: DUF4134 Location: 18958-19048 bp Feature: domain Description: DUF4134 Location: 18958-19048 bp Feature: gene Location: 19159-20970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19423-20245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942 3-2 02 45 bp Feature: domain Description: Intron_maturas2 Location: 20434-20644 bp Feature: domain Description: Intron_maturas2 Location: 2 0434-2 0644 bp Feature: domain Description: HNHc Note: nucleases Location: 20794-20899 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0794-2 0899 bp Feature: gene Location: 21512-21802 bp Feature: domain Description: DUF4134 Location: 21587-21785 bp Feature: domain Description: DUF4134 Location: 2 1587-2 1785 bp Feature: gene Location: 21864-22187 bp Feature: domain Description: DUF4134 Location: 21888-22173 bp Feature: domain Description: DUF4134 Location: 2 1888-2 2 173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RNA_pol_A_CTD (pfam03118), DUF4133 (pfam13571), DUF4134 (pfam13572), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGCO01000137.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.137, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 1-1379 bp Neighborhood of RT #1 [1, 1762] RVT_N RVT-GII GIIM Feature: gene Location: 1-110 bp Feature: gene Location: 107-1762 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1094 bp Feature: domain Description: GIIM Note: maturase Location: 1145-1379 bp Feature: domain Description: GIIM Note: maturase Location: 1145-13 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGCO01000102.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.102, whole genome shotgun sequence (11566 bp)
Overview 1 RT 1: 8007-11160 bp Neighborhood of RT #1 [8007, 11543] DUF1016_N YhcG_C TraG-D_C RVT-GII GIIM Feature: gene Location: 8007-9044 bp Feature: domain Description: DUF1016_N Location: 8064-8469 bp Feature: domain Description: DUF1016_N Location: 8064 -84 69 bp Feature: domain Description: YhcG_C Location: 8541-8994 bp Feature: domain Description: YhcG_C Location: 854 1-8994 bp Feature: gene Location: 9106-10506 bp Feature: domain Description: TraG-D_C Location: 9880-10213 bp Feature: domain Description: TraG-D_C Location: 9880-10213 bp Feature: gene Location: 10503-11543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10506-10875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10506-10875 bp Feature: domain Description: GIIM Note: maturase Location: 10926-11160 bp Feature: domain Description: GIIM Note: maturase Location: 10926-11160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1016_N (pfam17761), YhcG_C, TraG-D_C (pfam12696)

Seq: JGCO01000264.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.265, whole genome shotgun sequence (75535 bp)
Overview 1 RT 1: 71776-75396 bp Neighborhood of RT #1 [71776, 75535] Relaxase Relaxase YWFCY RVT_N RVT-GII Feature: gene Location: 71776-73047 bp Feature: domain Description: Relaxase Location: 71965-72385 bp Feature: domain Description: Relaxase Location: 71965 -72385 bp Feature: domain Description: Relaxase Location: 72577-72811 bp Feature: domain Description: Relaxase Location: 725 77-72811 bp Feature: gene Location: 73066-73788 bp Feature: domain Description: YWFCY Location: 73072-73249 bp Feature: domain Description: YWFCY Location: 73072-73249 bp Feature: gene Location: 74409-75535 bp Feature: RT Description: RVT_N Location: 74463-74706 bp Feature: RT Description: RVT_N Location: 74463-74706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74751-75396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475 1-75 396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII

Seq: JGCO01000059.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.59, whole genome shotgun sequence (6931 bp)
Overview 1 RT 1: 3300-6931 bp Neighborhood of RT #1 [3300, 6931] RteC HTH_17 RVT-GII Intron_maturas2 DDE_Tnp_1 Feature: gene Location: 3300-3533 bp Feature: domain Description: RteC Location: 3306-3510 bp Feature: domain Description: RteC Location: 3306 -3510 bp Feature: gene Location: 3663-3956 bp Feature: domain Description: HTH_17 Location: 3792-3906 bp Feature: domain Description: HTH_17 Location: 3792-3906 bp Feature: gene Location: 4308-6209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-556 2 bp Feature: domain Description: Intron_maturas2 Location: 5676-5955 bp Feature: domain Description: Intron_maturas2 Location: 56 76 -5955 bp Feature: gene Location: 6173-6778 bp Feature: domain Description: DDE_Tnp_1 Location: 6176-6593 bp Feature: domain Description: DDE_Tnp_1 Location: 6 176 -6 593 bp Feature: gene Location: 6731-6931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RteC (pfam09357), HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1 (pfam01609)

Seq: JGCO01000262.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.263, whole genome shotgun sequence (36922 bp)
Overview 1 RT 1: 16589-19445 bp Neighborhood of RT #1 [16589, 19513] RVT-Retrons COG3943 Feature: gene Location: 16589-16723 bp Feature: gene Location: 16872-17087 bp Feature: gene Location: 17113-17970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17275-17800 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17 27 5-17 800 bp Feature: gene Location: 18001-18882 bp Feature: gene Location: 19148-19513 bp Feature: domain Description: COG3943 Location: 19187-19445 bp Feature: domain Description: COG3943 Location: 19187 -19445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: JGCO01000165.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.165, whole genome shotgun sequence (6408 bp)
Overview 1 RT 1: 3282-6025 bp Neighborhood of RT #1 [3282, 6408] TraX TraG_VirD4 VirD4 RVT-GII GIIM Feature: gene Location: 3282-3965 bp Feature: domain Description: TraX Location: 3318-3954 bp Feature: domain Description: TraX Location: 3318 -3954 bp Feature: gene Location: 3977-5680 bp Feature: domain Description: TraG_VirD4 Location: 4202-4562 bp Feature: domain Description: TraG_VirD4 Location: 4202-4562 bp Feature: domain Description: VirD4 Location: 4733-5258 bp Feature: domain Description: VirD4 Location: 4733-5258 bp Feature: gene Location: 5677-6408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5680-5740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568 0-5740 bp Feature: domain Description: GIIM Note: maturase Location: 5791-6025 bp Feature: domain Description: GIIM Note: maturase Location: 5791-6025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), TraG_VirD4, VirD4 (COG3505), RVT-GII, GIIM (pfam08388)

Seq: JGCO01000130.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.130, whole genome shotgun sequence (25265 bp)
Overview 1 RT 1: 675-5114 bp Neighborhood of RT #1 [675, 5114] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 675-986 bp Feature: domain Description: DUF1738 Location: 678-954 bp Feature: domain Description: DUF1738 Location: 678-9 54 bp Feature: gene Location: 1555-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819-2641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819 -2641 bp Feature: domain Description: Intron_maturas2 Location: 2779-3019 bp Feature: domain Description: Intron_maturas2 Location: 2779 -3019 bp Feature: gene Location: 3488-4681 bp Feature: domain Description: MPTase-PolyVal Location: 3635-3947 bp Feature: domain Description: MPTase-PolyVal Location: 3635-39 47 bp Feature: gene Location: 4743-5114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), DUF1738 (pfam08401)

Seq: JGCO01000097.1 Bacteroides fragilis str. 2-F-2 #7 gbf2F27.contig.97, whole genome shotgun sequence (11652 bp)
Overview 1 RT 1: 7532-11269 bp Neighborhood of RT #1 [7532, 11652] AbiEi_3_N AbiEi_3 VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 7532-8296 bp Feature: domain Description: AbiEi_3_N Location: 7550-7823 bp Feature: domain Description: AbiEi_3_N Location: 7550-7823 bp Feature: domain Description: AbiEi_3 Location: 7835-8273 bp Feature: domain Description: AbiEi_3 Location: 7835-8273 bp Feature: gene Location: 8525-10093 bp Feature: domain Description: VirD4 Location: 9308-9620 bp Feature: domain Description: VirD4 Location: 9308-9620 bp Feature: gene Location: 10090-11652 bp Feature: RT Description: RVT_N Location: 10093-10294 bp Feature: RT Description: RVT_N Location: 10 093-10 294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10339-10984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 339-10 984 bp Feature: domain Description: GIIM Note: maturase Location: 11035-11269 bp Feature: domain Description: GIIM Note: maturase Location: 110 35-11269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), VirD4 (COG3505)