myRT

myRT report for GCA_000598205.1_ASM59820v1

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Seq: JGCZ01000360.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.367, whole genome shotgun sequence (23917 bp)
Overview 1 RT 1: 631-6573 bp Neighborhood of RT #1 [631, 6602] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 631-753 bp Feature: gene Location: 951-2120 bp Ori: EXY77496.1 Feature: domain Description: Arm-DNA-bind_5 Location: 981-1236 bp Feature: domain Description: Arm-DNA-bind_5 Location: 981 -1 236 bp Feature: domain Description: Phage_int_SAM_5 Location: 1275-1596 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 275-1 596 bp Feature: domain Description: INTN1_C_like Location: 1635-2103 bp Feature: domain Description: INTN1 _C_like Location: 1 635-21 03 bp Feature: gene Location: 2671-4479 bp Ori: EXY77497.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935-3757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935-3757 bp Feature: domain Description: Intron_maturas2 Location: 3883-4138 bp Feature: domain Description: Intron_maturas2 Location: 3883-41 38 bp Feature: gene Location: 4694-5056 bp Ori: EXY77498.1 Feature: domain Description: COG3943 Location: 4733-4988 bp Feature: domain Description: COG3943 Location: 4733-4988 bp Feature: gene Location: 5271-6602 bp Ori: EXY77499.1 Feature: domain Description: Phage_int_SAM_5 Location: 5706-5979 bp Feature: domain Description: Phage_int_SAM_5 Location: 5706-5979 bp Feature: domain Description: INTN1_C_like Location: 6057-6573 bp Feature: domain Description: INTN1 _C_like Location: 6057-6573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein )

Seq: JGCZ01000439.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.447, whole genome shotgun sequence (2739 bp)
Overview 1 RT 1: 1-2737 bp Neighborhood of RT #1 [1, 2739] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 1-506 bp Feature: gene Location: 526-2739 bp Ori: EXY77198.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 733-1339 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 733-1339 bp Feature: domain Description: Cas1_I-II-III Location: 1798-2737 bp Feature: domain Description: Cas1_I-II-III Location: 1798-2 737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGCZ01000254.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.258, whole genome shotgun sequence (2814 bp)
Overview 1 RT 1: 1-2302 bp Neighborhood of RT #1 [1, 2694] RVT_N RVT-GII GIIM Feature: gene Location: 1-370 bp Feature: gene Location: 769-885 bp Feature: gene Location: 1027-2694 bp Ori: EXY77943.1 Feature: domain Description: RVT_N Location: 1081-1324 bp Feature: domain Description: RVT_N Location: 1081-13 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369-2017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 69-2017 bp Feature: domain Description: GIIM Note: maturase Location: 2071-2302 bp Feature: domain Description: GIIM Note: maturase Location: 2071-23 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGCZ01000035.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.35, whole genome shotgun sequence (82171 bp)
Overview 1 RT 1: 11287-20245 bp Neighborhood of RT #1 [11287, 20253] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 11287-13467 bp Ori: EXY81245.1 Feature: domain Description: GlnA3 Location: 11353-13465 bp Feature: domain Description: GlnA3 Location: 11353-134 65 bp Feature: gene Location: 13779-15935 bp Feature: gene Location: 16142-17254 bp Ori: EXY81247.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16457-17006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164 57-17006 bp Feature: gene Location: 17396-19189 bp Ori: EXY81248.1 Feature: domain Description: rpsA Location: 17474-19082 bp Feature: domain Description: rpsA Location: 174 74 -19082 bp Feature: gene Location: 19339-20253 bp Ori: EXY81249.1 Gene: rnz Feature: domain Description: RNase_Z Location: 19354-20245 bp Feature: domain Description: RNase_Z Location: 19354 -2024 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCZ01000042.1 Bacteroides fragilis str. 3988 T1 gbf3988T1.contig.42, whole genome shotgun sequence (39349 bp)
Overview 1 RT 1: 13420-17388 bp Neighborhood of RT #1 [13420, 17408] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Feature: gene Location: 13420-13980 bp Ori: EXY81056.1 Feature: domain Description: TraO Location: 13477-13975 bp Feature: domain Description: TraO Location: 13477-13975 bp Feature: gene Location: 14005-14886 bp Ori: EXY81057.1 Feature: domain Description: Bac_Flav_CT_N Location: 14128-14866 bp Feature: domain Description: Bac_Flav_CT_N Location: 14128-14866 bp Feature: gene Location: 14876-16684 bp Ori: EXY81058.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15140-15962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 140-15 962 bp Feature: domain Description: Intron_maturas2 Location: 16121-16343 bp Feature: domain Description: Intron_maturas2 Location: 16121-16343 bp Feature: domain Description: HNHc Note: nucleases Location: 16517-16658 bp Feature: domain Description: HNHc Note: nucleases Location: 165 17-1665 8 bp Feature: gene Location: 16683-16862 bp Feature: gene Location: 17226-17408 bp Ori: EXY81060.1 Feature: domain Description: Bac_Flav_CT_N Location: 17229-17388 bp Feature: domain Description: Bac_Flav_CT_N Location: 17229-17388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)