myRT

myRT report for GCA_000598225.1_ASM59822v1

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Seq: JGDA01000222.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.221, whole genome shotgun sequence (111116 bp)
Overview 1 RT 1: 1-1538 bp Neighborhood of RT #1 [1, 1543] RVT-UNC PRK07116 Feature: gene Location: 1-564 bp Ori: EXY84810.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 16-208 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 6-208 bp Feature: gene Location: 802-915 bp Feature: gene Location: 974-1543 bp Ori: EXY84812.1 Feature: domain Description: PRK07116 Location: 1070-1538 bp Feature: domain Description: PRK071 1 6 Location: 1 070-1 538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b/RVT-GII/RVT-DGRs(RVT-UNC), PRK07116 (flavodoxin; Provisional)

Seq: JGDA01000107.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.106, whole genome shotgun sequence (2467 bp)
Overview 1 RT 1: 113-1754 bp Neighborhood of RT #1 [113, 1783] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 113-1783 bp Ori: EXY87017.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 33-1055 bp Feature: domain Description: Intron_maturas2 Location: 1199-1433 bp Feature: domain Description: Intron_maturas2 Location: 1199-1433 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDA01000074.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.73, whole genome shotgun sequence (2514 bp)
Overview 1 RT 1: 773-2380 bp Neighborhood of RT #1 [773, 2418] DUF3876 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 773-1153 bp Ori: EXY87084.1 Feature: domain Description: DUF3876 Location: 857-1118 bp Feature: domain Description: DUF3 876 Location: 857-1118 bp Feature: gene Location: 1173-1325 bp Feature: gene Location: 1420-2418 bp Ori: EXY87086.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1468-1678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1468-1678 bp Feature: domain Description: Intron_maturas2 Location: 1852-2098 bp Feature: domain Description: Intron_maturas2 Location: 1852-2098 bp Feature: domain Description: HNHc Note: nucleases Location: 2209-2380 bp Feature: domain Description: HNHc Note: nucleases Location: 2209-23 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDA01000104.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.103, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 1-1810 bp Neighborhood of RT #1 [1, 1839] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1839 bp Ori: EXY87024.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-1111 bp Feature: domain Description: Intron_maturas2 Location: 1255-1489 bp Feature: domain Description: Intron_maturas2 Location: 1255-14 89 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1810 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDA01000146.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.145, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 115-1894 bp Neighborhood of RT #1 [115, 1920] RVT-GII matK HNHc Feature: gene Location: 115-1920 bp Ori: EXY86865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: domain Description: matK Location: 1378-1591 bp Feature: domain Description: matK Location: 1378-15 91 bp Feature: domain Description: HNHc Note: nucleases Location: 1753-1894 bp Feature: domain Description: HNHc Note: nucleases Location: 175 3-1894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: JGDA01000130.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.129, whole genome shotgun sequence (2058 bp)
Overview 1 RT 1: 276-1917 bp Neighborhood of RT #1 [276, 1946] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 276-1946 bp Ori: EXY86970.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396 -1218 bp Feature: domain Description: Intron_maturas2 Location: 1362-1596 bp Feature: domain Description: Intron_maturas2 Location: 136 2-1596 bp Feature: domain Description: HNHc Note: nucleases Location: 1764-1917 bp Feature: domain Description: HNHc Note: nucleases Location: 176 4-1917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDA01000087.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.86, whole genome shotgun sequence (1030 bp)
Overview 1 RT 1: 1-973 bp Neighborhood of RT #1 [1, 984] RVT-GII Feature: gene Location: 1-984 bp Ori: EXY87068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-97 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGDA01000037.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.36, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 19-2047 bp Neighborhood of RT #1 [19, 2047] RVT-DGRs Feature: gene Location: 19-162 bp Feature: gene Location: 358-1659 bp Ori: EXY87203.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 571-1168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 571-1168 bp Feature: gene Location: 1656-2047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDA01000126.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.125, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 1-1397 bp Neighborhood of RT #1 [1, 1774] RVT_N RVT-GII GIIM Feature: gene Location: 1-117 bp Feature: gene Location: 122-1774 bp Ori: EXY86980.1 Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-139 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDA01000221.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.220, whole genome shotgun sequence (73152 bp)
Overview 1 RT 1: 70975-73148 bp Neighborhood of RT #1 [70975, 73152] RVT-CRISPR-like Feature: gene Location: 70975-71106 bp Feature: gene Location: 71096-72391 bp Feature: gene Location: 72515-73152 bp Ori: EXY84973.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72701-73148 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72701-73148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JGDA01000257.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.256, whole genome shotgun sequence (21844 bp)
Overview 1 RT 1: 16648-21844 bp Neighborhood of RT #1 [16648, 21844] AtoC RVT-GII Feature: gene Location: 16648-17970 bp Ori: EXY83415.1 Feature: domain Description: AtoC Location: 16654-17950 bp Feature: domain Description: AtoC Location: 16654-17950 bp Feature: gene Location: 18250-18414 bp Feature: gene Location: 19685-19798 bp Ori: EXY83417.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19697-19793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19697-19793 bp Feature: gene Location: 20709-21844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), RVT-GII

Seq: JGDA01000017.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.16, whole genome shotgun sequence (1581 bp)
Overview 1 RT 1: 1-1293 bp Neighborhood of RT #1 [1, 1293] RVT-GII Feature: gene Location: 1-984 bp Ori: EXY87439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-973 bp Feature: gene Location: 1090-1293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGDA01000019.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.18, whole genome shotgun sequence (63323 bp)
Overview 1 RT 1: 1-2989 bp Neighborhood of RT #1 [1, 2989] RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 1-1839 bp Ori: EXY87370.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-1111 bp Feature: domain Description: Intron_maturas2 Location: 1255-1489 bp Feature: domain Description: Intron_maturas2 Location: 1255-1489 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1810 bp Feature: domain Description: HNHc Note: nucleases Location: 1657-1810 bp Feature: gene Location: 1986-2822 bp Ori: EXY87371.1 Feature: domain Description: TraG-D_C Location: 2181-2514 bp Feature: domain Description: TraG-D_C Location: 2181-2514 bp Feature: gene Location: 2861-2989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696)

Seq: JGDA01000262.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.261, whole genome shotgun sequence (139225 bp)
Overview 1 RT 1: 137217-139225 bp Neighborhood of RT #1 [137217, 139225] RVT-DGRs Feature: gene Location: 137217-137450 bp Feature: gene Location: 137517-137630 bp Feature: gene Location: 137826-139127 bp Ori: EXY83142.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 138039-138636 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 138039-138636 bp Feature: gene Location: 139124-139225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDA01000004.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.3, whole genome shotgun sequence (2444 bp)
Overview 1 RT 1: 452-2034 bp Neighborhood of RT #1 [452, 2411] RVT_N RVT-GII GIIM Feature: gene Location: 452-814 bp Feature: gene Location: 819-2411 bp Ori: EXY87485.1 Feature: domain Description: RVT_N Location: 822-1056 bp Feature: domain Description: RVT_N Location: 822-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1749 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2034 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDA01000110.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.109, whole genome shotgun sequence (1940 bp)
Overview 1 RT 1: 1-1900 bp Neighborhood of RT #1 [1, 1926] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-128 bp Feature: gene Location: 115-1926 bp Ori: EXY87011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1198 bp Feature: domain Description: Intron_maturas2 Location: 1273-1615 bp Feature: domain Description: Intron_maturas2 Location: 1273-16 15 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Feature: domain Description: HNHc Note: nucleases Location: 1756-1900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDA01000030.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.29, whole genome shotgun sequence (113205 bp)
Overview 1 RT 1: 111197-113205 bp Neighborhood of RT #1 [111197, 113205] RVT-DGRs Feature: gene Location: 111197-111430 bp Feature: gene Location: 111497-111610 bp Feature: gene Location: 111806-113107 bp Ori: EXY87349.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 112019-112616 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 112019-112616 bp Feature: gene Location: 113104-113205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDA01000124.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.123, whole genome shotgun sequence (2457 bp)
Overview 1 RT 1: 452-2034 bp Neighborhood of RT #1 [452, 2411] RVT_N RVT-GII GIIM Feature: gene Location: 452-814 bp Feature: gene Location: 819-2411 bp Ori: EXY86983.1 Feature: domain Description: RVT_N Location: 822-1056 bp Feature: domain Description: RVT_N Location: 822-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1749 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2034 bp Feature: domain Description: GIIM Note: maturase Location: 18 03-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDA01000027.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.26, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-935 bp Neighborhood of RT #1 [1, 935] RVT-GII Feature: gene Location: 1-370 bp Ori: EXY87354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-367 bp Feature: gene Location: 802-935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGDA01000195.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.194, whole genome shotgun sequence (76699 bp)
Overview 1 RT 1: 11552-20510 bp Neighborhood of RT #1 [11552, 20518] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 11552-13741 bp Ori: EXY85706.1 Feature: domain Description: GlnA3 Location: 11627-13739 bp Feature: domain Description: GlnA3 Location: 11627-13739 bp Feature: gene Location: 14044-16200 bp Feature: gene Location: 16407-17519 bp Ori: EXY85708.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16722-17271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16722-17271 bp Feature: gene Location: 17661-19454 bp Ori: EXY85709.1 Feature: domain Description: rpsA Location: 17739-19347 bp Feature: domain Description: rpsA Location: 17739-19347 bp Feature: gene Location: 19604-20518 bp Ori: EXY85710.1 Gene: rnz Feature: domain Description: RNase_Z Location: 19619-20510 bp Feature: domain Description: RNase_Z Location: 19619-20 510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDA01000043.1 Bacteroides fragilis str. 3996 N(B) 6 gbf3996NB6.contig.42, whole genome shotgun sequence (3079 bp)
Overview 1 RT 1: 99-2986 bp Neighborhood of RT #1 [99, 2994] RVT-GII matK HNHc KAS_III adh_short_C2 Feature: gene Location: 99-1904 bp Ori: EXY87170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1185 bp Feature: domain Description: matK Location: 1362-1575 bp Feature: domain Description: matK Location: 1362-1575 bp Feature: domain Description: HNHc Note: nucleases Location: 1737-1878 bp Feature: domain Description: HNHc Note: nucleases Location: 1737-1878 bp Feature: gene Location: 2009-2326 bp Ori: EXY87171.1 Feature: domain Description: KAS_III Location: 2024-2318 bp Feature: domain Description: KAS_III Location: 2024-2318 bp Feature: gene Location: 2335-2994 bp Ori: EXY87172.1 Feature: domain Description: adh_short_C2 Location: 2341-2986 bp Feature: domain Description: adh_short_C2 Location: 2341-2986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507), KAS_III (cd00830), adh_short_C2 (pfam13561)