myRT

myRT report for GCA_000598245.1_ASM59824v1

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Seq: JGDD01000071.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.74, whole genome shotgun sequence (147312 bp)
Overview 1 RT 1: 71449-80407 bp Neighborhood of RT #1 [71449, 80415] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 71449-73638 bp Ori: EXZ01670.1 Feature: domain Description: GlnA3 Location: 71524-73636 bp Feature: domain Description: GlnA3 Location: 71 524-73636 bp Feature: gene Location: 73941-76097 bp Feature: gene Location: 76304-77416 bp Ori: EXZ01752.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76619-77168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7661 9-771 68 bp Feature: gene Location: 77558-79351 bp Ori: EXZ01710.1 Feature: domain Description: rpsA Location: 77636-79244 bp Feature: domain Description: rpsA Location: 77636-79244 bp Feature: gene Location: 79501-80415 bp Ori: EXZ01711.1 Gene: rnz Feature: domain Description: RNase_Z Location: 79516-80407 bp Feature: domain Description: RNase_Z Location: 7951 6-80407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDD01000016.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.16, whole genome shotgun sequence (8366 bp)
Overview 1 RT 1: 4173-7779 bp Neighborhood of RT #1 [4173, 7820] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 4173-4583 bp Ori: EXZ02919.1 Feature: domain Description: Cas_Cmr5 Location: 4221-4467 bp Feature: domain Description: Cas_Cmr5 Location: 42 2 1-4467 bp Feature: gene Location: 4586-5530 bp Ori: EXZ02920.1 Feature: domain Description: Cmr6_III-B Location: 4742-5519 bp Feature: domain Description: Cmr6_III-B Location: 4742 -5519 bp Feature: gene Location: 5550-7820 bp Ori: EXZ02921.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5757-6363 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5757-6363 bp Feature: domain Description: Cas1_I-II-III Location: 6822-7779 bp Feature: domain Description: Cas1_I-II-III Location: 682 2 -7779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGDD01000090.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.93, whole genome shotgun sequence (380200 bp)
Overview 1 RT 1: 309625-314131 bp Neighborhood of RT #1 [309625, 314131] NHL 7WD40 RVT-GII Feature: gene Location: 309625-310938 bp Feature: gene Location: 310935-311990 bp Ori: EXZ00729.1 Feature: domain Description: NHL Location: 311157-311523 bp Feature: domain Description: NHL Location: 3 11157-3 11523 bp Feature: domain Description: 7WD40 Location: 311574-311955 bp Feature: domain Description: 7WD40 Location: 3 11574-3 11955 bp Feature: gene Location: 313002-313190 bp Ori: EXZ00705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313095-313164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 13 095-3 13 164 bp Feature: gene Location: 313851-313985 bp Feature: gene Location: 313994-314131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT-GII

Seq: JGDD01000108.1 Bacteroides fragilis str. DS-166 gbfDS166.contig.111, whole genome shotgun sequence (85015 bp)
Overview 1 RT 1: 26186-30908 bp Neighborhood of RT #1 [26186, 30908] Dam RVT-DGRs Feature: gene Location: 26186-27028 bp Ori: EXY99439.1 Feature: domain Description: Dam Location: 26189-26957 bp Feature: domain Description: Dam Location: 26189-26957 bp Feature: gene Location: 27215-27625 bp Feature: gene Location: 27639-28715 bp Ori: EXY99478.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27642-28173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2764 2-28173 bp Feature: gene Location: 28725-28847 bp Feature: gene Location: 29478-30908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs