myRT

myRT report for GCA_000598285.1_ASM59828v1

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Seq: JGCN01000029.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.29, whole genome shotgun sequence (104844 bp)
Overview 1 RT 1: 18386-27345 bp Neighborhood of RT #1 [18386, 27353] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 18386-20575 bp Feature: domain Description: GlnA3 Location: 18461-20573 bp Feature: domain Description: GlnA3 Location: 1 8461 -20573 bp Feature: gene Location: 20878-23034 bp Feature: gene Location: 23241-24353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23556-24105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23556-241 05 bp Feature: gene Location: 24495-26288 bp Feature: domain Description: rpsA Location: 24573-26181 bp Feature: domain Description: rpsA Location: 24573-261 81 bp Feature: gene Location: 26439-27353 bp Feature: domain Description: RNase_Z Location: 26454-27345 bp Feature: domain Description: RNase_Z Location: 26454-27345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCN01000216.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.219, whole genome shotgun sequence (30438 bp)
Overview 1 RT 1: 17321-20861 bp Neighborhood of RT #1 [17321, 20875] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 17321-17614 bp Feature: domain Description: DUF4133 Location: 17360-17540 bp Feature: domain Description: DUF4133 Location: 17360-17540 bp Feature: gene Location: 17628-17750 bp Feature: domain Description: DUF4134 Location: 17646-17736 bp Feature: domain Description: DUF4134 Location: 17646-17736 bp Feature: gene Location: 17847-19658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18111-18933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18111-18933 bp Feature: domain Description: Intron_maturas2 Location: 19122-19332 bp Feature: domain Description: Intron_maturas2 Location: 1912 2 -19332 bp Feature: domain Description: HNHc Note: nucleases Location: 19482-19587 bp Feature: domain Description: HNHc Note: nucleases Location: 19482 -19587 bp Feature: gene Location: 20200-20442 bp Feature: domain Description: DUF4134 Location: 20227-20425 bp Feature: domain Description: DUF4134 Location: 2 02 2 7-2 042 5 bp Feature: gene Location: 20552-20875 bp Feature: domain Description: DUF4134 Location: 20576-20861 bp Feature: domain Description: DUF4134 Location: 2 0576-2 0861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGCN01000034.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.34, whole genome shotgun sequence (126003 bp)
Overview 1 RT 1: 69-3930 bp Neighborhood of RT #1 [69, 3980] RVT-GII GIIM TraG-D_C DUF1016_N YhcG_C Feature: gene Location: 69-1484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-816 bp Feature: domain Description: GIIM Note: maturase Location: 867-1101 bp Feature: domain Description: GIIM Note: maturase Location: 867-1101 bp Feature: gene Location: 1481-2881 bp Feature: domain Description: TraG-D_C Location: 2255-2588 bp Feature: domain Description: TraG-D_C Location: 2255-2588 bp Feature: gene Location: 2943-3980 bp Feature: domain Description: DUF1016_N Location: 3000-3405 bp Feature: domain Description: DUF1016_N Location: 3 000-3 405 bp Feature: domain Description: YhcG_C Location: 3477-3930 bp Feature: domain Description: YhcG_C Location: 3 477-3 93 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), DUF1016_N (pfam17761), YhcG_C, RVT-GII, GIIM (pfam08388)

Seq: JGCN01000153.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.155, whole genome shotgun sequence (21009 bp)
Overview 1 RT 1: 1783-5163 bp Neighborhood of RT #1 [1783, 5255] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 1783-2148 bp Feature: domain Description: COG3943 Location: 1822-2080 bp Feature: domain Description: COG394 3 Location: 1822-2080 bp Feature: gene Location: 2414-3295 bp Feature: gene Location: 3326-4183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3488-4013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 88-4 013 bp Feature: gene Location: 4209-4424 bp Feature: gene Location: 4890-5255 bp Feature: domain Description: HTH_17 Location: 5025-5163 bp Feature: domain Description: HTH_17 Location: 5025-5163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: JGCN01000167.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.169, whole genome shotgun sequence (6963 bp)
Overview 1 RT 1: 3204-6963 bp Neighborhood of RT #1 [3204, 6963] RteC HTH_17 RVT-GII Intron_maturas2 DDE_Tnp_1 Feature: gene Location: 3204-3533 bp Feature: domain Description: RteC Location: 3273-3510 bp Feature: domain Description: RteC Location: 3273-35 10 bp Feature: gene Location: 3663-3956 bp Feature: domain Description: HTH_17 Location: 3792-3906 bp Feature: domain Description: HTH_17 Location: 3792-3906 bp Feature: gene Location: 4308-6209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-5 5 62 bp Feature: domain Description: Intron_maturas2 Location: 5676-5955 bp Feature: domain Description: Intron_maturas2 Location: 5 676-5 95 5 bp Feature: gene Location: 6173-6778 bp Feature: domain Description: DDE_Tnp_1 Location: 6176-6593 bp Feature: domain Description: DDE_Tnp_1 Location: 6176-65 93 bp Feature: gene Location: 6731-6963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RteC (pfam09357), HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1 (pfam01609)

Seq: JGCN01000188.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.191, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 502-1774 bp Neighborhood of RT #1 [502, 2047] RVT_N RVT-GII GIIM Feature: gene Location: 502-2047 bp Feature: RT Description: RVT_N Location: 556-799 bp Feature: RT Description: RVT_N Location: 556 -799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1489 bp Feature: domain Description: GIIM Note: maturase Location: 1540-1774 bp Feature: domain Description: GIIM Note: maturase Location: 1540-1774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGCN01000228.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.231, whole genome shotgun sequence (2389 bp)
Overview 1 RT 1: 121-2046 bp Neighborhood of RT #1 [121, 2046] RVT_N RVT-GII GIIM Feature: gene Location: 121-1788 bp Feature: RT Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT_N Location: 17 5-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1111 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: gene Location: 1930-2046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGCN01000199.1 Bacteroides fragilis str. 2-F-2 #5 gbf2F25.contig.202, whole genome shotgun sequence (25132 bp)
Overview 1 RT 1: 1-5271 bp Neighborhood of RT #1 [1, 5271] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 1-616 bp Feature: gene Location: 832-1143 bp Feature: domain Description: DUF1738 Location: 835-1111 bp Feature: domain Description: DUF1738 Location: 8 35-1111 bp Feature: gene Location: 1712-3523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1976-2798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1976-2798 bp Feature: domain Description: Intron_maturas2 Location: 2936-3176 bp Feature: domain Description: Intron_maturas2 Location: 2936-3176 bp Feature: gene Location: 3645-4838 bp Feature: domain Description: MPTase-PolyVal Location: 3792-4104 bp Feature: domain Description: MPTase-PolyVal Location: 3792-4104 bp Feature: gene Location: 4900-5271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), DUF1738 (pfam08401)