myRT

myRT report for GCA_000598305.1_ASM59830v1

Download annotations/find similar RTs

Seq: JGCR01000168.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.172, whole genome shotgun sequence (114501 bp)
Overview 1 RT 1: 44411-53369 bp Neighborhood of RT #1 [44411, 53377] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 44411-46600 bp Ori: EXY42075.1 Feature: domain Description: GlnA3 Location: 44483-46598 bp Feature: domain Description: GlnA3 Location: 44483-46598 bp Feature: gene Location: 46903-49059 bp Feature: gene Location: 49266-50378 bp Ori: EXY42077.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49581-50130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49581 -501 30 bp Feature: gene Location: 50520-52313 bp Ori: EXY42078.1 Feature: domain Description: rpsA Location: 50598-52206 bp Feature: domain Description: rpsA Location: 50598-52206 bp Feature: gene Location: 52463-53377 bp Ori: EXY42079.1 Gene: rnz Feature: domain Description: RNase_Z Location: 52478-53369 bp Feature: domain Description: RNase_Z Location: 52478-53369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCR01000042.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.42, whole genome shotgun sequence (33639 bp)
Overview 1 RT 1: 5560-11826 bp Neighborhood of RT #1 [5560, 11936] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 5560-5883 bp Ori: EXY43374.1 Feature: domain Description: DUF4134 Location: 5584-5869 bp Feature: domain Description: DUF4134 Location: 5584-5869 bp Feature: gene Location: 5945-6235 bp Ori: EXY43375.1 Feature: domain Description: DUF4134 Location: 6020-6218 bp Feature: domain Description: DUF4134 Location: 602 0-62 18 bp Feature: gene Location: 6777-8588 bp Ori: EXY43376.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7041-7863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7041-7863 bp Feature: domain Description: Intron_maturas2 Location: 8052-8262 bp Feature: domain Description: Intron_maturas2 Location: 8052 -82 62 bp Feature: domain Description: HNHc Note: nucleases Location: 8412-8517 bp Feature: domain Description: HNHc Note: nucleases Location: 8412 -8517 bp Feature: gene Location: 8821-9114 bp Ori: EXY43377.1 Feature: domain Description: DUF4133 Location: 8860-9040 bp Feature: domain Description: DUF4133 Location: 8860-9040 bp Feature: gene Location: 9225-11936 bp Ori: EXY43378.1 Feature: domain Description: Bac_Flav_CT_G Location: 9372-10875 bp Feature: domain Description: Bac_Flav_CT_G Location: 9372 -10875 bp Feature: domain Description: Bac_Flav_CT_G Location: 10890-11826 bp Feature: domain Description: Bac_Flav_CT_G Location: 10890-1182 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: JGCR01000046.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.46, whole genome shotgun sequence (6826 bp)
Overview 1 RT 1: 3918-6798 bp Neighborhood of RT #1 [3918, 6826] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas_Cas1 Feature: gene Location: 3918-4328 bp Ori: EXY43359.1 Feature: domain Description: Cas_Cmr5 Location: 3966-4236 bp Feature: domain Description: Cas_Cmr5 Location: 3 966-423 6 bp Feature: gene Location: 4331-5275 bp Ori: EXY43360.1 Feature: domain Description: Cmr6_III-B Location: 4487-5264 bp Feature: domain Description: Cmr6_III-B Location: 4487-5264 bp Feature: gene Location: 5295-6826 bp Ori: EXY43361.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5502-6108 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5502-6108 bp Feature: domain Description: Cas_Cas1 Location: 6570-6798 bp Feature: domain Description: Cas_Cas1 Location: 6570-6798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas_Cas1 (pfam01867)

Seq: JGCR01000230.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.235, whole genome shotgun sequence (76885 bp)
Overview 1 RT 1: 7142-11026 bp 2 RT 2: 20741-25920 bp Neighborhood of RT #1 [7142, 11046] Avd_like RVT-DGRs YbdN Neighborhood of RT #2 [20741, 25934] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 7142-7513 bp Ori: EXY41078.1 Feature: domain Description: Avd_like Location: 7169-7472 bp Feature: domain Description: Avd_like Location: 7169-74 72 bp Feature: gene Location: 7808-8029 bp Feature: gene Location: 8416-9348 bp Ori: EXY41080.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8551-8905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8551-8905 bp Feature: gene Location: 9446-9763 bp Feature: gene Location: 9883-11046 bp Ori: EXY41082.1 Feature: domain Description: YbdN Location: 9886-11026 bp Feature: domain Description: YbdN Location: 9886-11026 bp Feature: gene Location: 20741-22768 bp Ori: EXY41097.1 Feature: domain Description: Bac_Flav_CT_G Location: 20744-22763 bp Feature: domain Description: Bac_Flav_CT_G Location: 2074 4 -22763 bp Feature: gene Location: 23228-23368 bp Feature: gene Location: 23392-25050 bp Ori: EXY41099.1 Feature: domain Description: RVT_N Location: 23446-23689 bp Feature: domain Description: RVT_N Location: 234 4 6-23689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23734-24385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23734 -24 385 bp Feature: domain Description: GIIM Note: maturase Location: 24436-24670 bp Feature: domain Description: GIIM Note: maturase Location: 24 4 36-24 670 bp Feature: gene Location: 25053-25655 bp Ori: EXY41100.1 Feature: domain Description: Bac_Flav_CT_G Location: 25167-25629 bp Feature: domain Description: Bac_Flav_CT_G Location: 25167-25629 bp Feature: gene Location: 25662-25934 bp Ori: EXY41101.1 Feature: domain Description: DUF3876 Location: 25689-25920 bp Feature: domain Description: DUF3876 Location: 25689-25920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)