myRT

myRT report for GCA_000598365.1_ASM59836v1

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Seq: JGCY01000244.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.245, whole genome shotgun sequence (142308 bp)
Overview 1 RT 1: 70346-79304 bp Neighborhood of RT #1 [70346, 79312] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 70346-72535 bp Ori: EXY75310.1 Feature: domain Description: GlnA3 Location: 70421-72533 bp Feature: domain Description: GlnA3 Location: 70421 -72533 bp Feature: gene Location: 72838-74994 bp Feature: gene Location: 75201-76313 bp Ori: EXY75312.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75516-76065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7551 6-76065 bp Feature: gene Location: 76455-78248 bp Ori: EXY75313.1 Feature: domain Description: rpsA Location: 76533-78141 bp Feature: domain Description: rpsA Location: 76533-781 41 bp Feature: gene Location: 78398-79312 bp Ori: EXY75314.1 Gene: rnz Feature: domain Description: RNase_Z Location: 78413-79304 bp Feature: domain Description: RNase_Z Location: 7841 3-79304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCY01000156.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.157, whole genome shotgun sequence (40386 bp)
Overview 1 RT 1: 24694-32086 bp Neighborhood of RT #1 [24694, 32086] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 24694-25941 bp Ori: EXY76494.1 Feature: domain Description: Relaxase Location: 24886-25246 bp Feature: domain Description: Relaxase Location: 2 4886-2 52 46 bp Feature: gene Location: 25972-26898 bp Ori: EXY76495.1 Feature: domain Description: YWFCY Location: 25981-26158 bp Feature: domain Description: YWFCY Location: 2 5981-2 6158 bp Feature: gene Location: 27536-29188 bp Ori: EXY76496.1 Feature: domain Description: RVT_N Location: 27590-27833 bp Feature: domain Description: RVT_N Location: 2 7590-2 7833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27878-28526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7878-2 852 6 bp Feature: domain Description: GIIM Note: maturase Location: 28580-28811 bp Feature: domain Description: GIIM Note: maturase Location: 2 8580-2 8811 bp Feature: gene Location: 29310-30407 bp Ori: EXY76497.1 Feature: domain Description: TraG-D_C Location: 29775-30105 bp Feature: domain Description: TraG-D_C Location: 2 9775-30105 bp Feature: gene Location: 30539-32086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: JGCY01000147.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.148, whole genome shotgun sequence (18389 bp)
Overview 1 RT 1: 11596-17230 bp Neighborhood of RT #1 [11596, 17247] Phage_int_SAM_5 INTN1_C_like COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 11596-12927 bp Ori: EXY76532.1 Feature: domain Description: Phage_int_SAM_5 Location: 12031-12304 bp Feature: domain Description: Phage_int_SAM_5 Location: 1203 1-123 04 bp Feature: domain Description: INTN1_C_like Location: 12382-12898 bp Feature: domain Description: INTN1_C_like Location: 123 82-12898 bp Feature: gene Location: 13142-13504 bp Ori: EXY76533.1 Feature: domain Description: COG3943 Location: 13181-13436 bp Feature: domain Description: COG3 943 Location: 13 181-13 43 6 bp Feature: gene Location: 13719-15428 bp Ori: EXY76534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13884-14706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 884-14706 bp Feature: domain Description: Intron_maturas2 Location: 14832-15087 bp Feature: domain Description: Intron_maturas2 Location: 1483 2-15087 bp Feature: gene Location: 15827-15952 bp Feature: gene Location: 16078-17247 bp Ori: EXY76536.1 Feature: domain Description: Arm-DNA-bind_5 Location: 16108-16363 bp Feature: domain Description: Arm-DNA-bind_5 Location: 16108-163 63 bp Feature: domain Description: Phage_int_SAM_5 Location: 16402-16723 bp Feature: domain Description: Phage_int_SAM_5 Location: 16402-16723 bp Feature: domain Description: INTN1_C_like Location: 16762-17230 bp Feature: domain Description: INTN1_C_like Location: 16762-1723 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293)

Seq: JGCY01000140.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.141, whole genome shotgun sequence (1578 bp)
Overview 1 RT 1: 20-1350 bp Neighborhood of RT #1 [20, 1578] Cmr6_III-B RVT-CRISPR Feature: gene Location: 20-517 bp Ori: EXY76563.1 Gene: cmr Feature: domain Description: Cmr6_III-B Location: 143-506 bp Feature: domain Description: Cmr6_III-B Location: 14 3-506 bp Feature: gene Location: 537-1578 bp Ori: EXY76564.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 744-1350 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 74 4 -1350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr6_III-B (cd09661), RVT-CRISPR

Seq: JGCY01000101.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.102, whole genome shotgun sequence (27400 bp)
Overview 1 RT 1: 18572-22555 bp Neighborhood of RT #1 [18572, 22560] Bac_Flav_CT_N RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N TraO Feature: gene Location: 18572-18754 bp Ori: EXY76763.1 Feature: domain Description: Bac_Flav_CT_N Location: 18575-18734 bp Feature: domain Description: Bac_Flav_CT_N Location: 185 75 -18734 bp Feature: gene Location: 19118-19297 bp Feature: gene Location: 19296-21104 bp Ori: EXY76765.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19560-20382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195 60-20382 bp Feature: domain Description: Intron_maturas2 Location: 20541-20763 bp Feature: domain Description: Intron_maturas2 Location: 205 41-20763 bp Feature: domain Description: HNHc Note: nucleases Location: 20937-21078 bp Feature: domain Description: HNHc Note: nucleases Location: 20937-21078 bp Feature: gene Location: 21094-21975 bp Ori: EXY76766.1 Feature: domain Description: Bac_Flav_CT_N Location: 21217-21955 bp Feature: domain Description: Bac_Flav_CT_N Location: 21217-2195 5 bp Feature: gene Location: 22000-22560 bp Ori: EXY76767.1 Feature: domain Description: TraO Location: 22057-22555 bp Feature: domain Description: TraO Location: 2205 7-225 5 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraO (pfam10626)