myRT

myRT report for GCA_000598385.1_ASM59838v1

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Seq: JGDC01000368.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.373, whole genome shotgun sequence (59437 bp)
Overview 1 RT 1: 55821-58548 bp Neighborhood of RT #1 [55821, 58548] RVT-DGRs Feature: gene Location: 55821-56063 bp Feature: gene Location: 56243-56728 bp Feature: gene Location: 56725-57894 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56800-57478 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56800-57478 bp Feature: gene Location: 57904-58344 bp Feature: gene Location: 58408-58548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDC01000112.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.115, whole genome shotgun sequence (25790 bp)
Overview 1 RT 1: 12425-16829 bp Neighborhood of RT #1 [12425, 16829] YbdN RVT-DGRs Avd_like Feature: gene Location: 12425-13624 bp Feature: domain Description: YbdN Location: 12440-13604 bp Feature: domain Description: YbdN Location: 12 440-13604 bp Feature: gene Location: 13708-14148 bp Feature: gene Location: 14123-15196 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14126-14795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1412 6-14795 bp Feature: gene Location: 15958-16329 bp Feature: domain Description: Avd_like Location: 15985-16288 bp Feature: domain Description: Avd_like Location: 15985-162 88 bp Feature: gene Location: 16347-16829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbdN (COG3969), RVT-DGRs, Avd_like (cd16376)

Seq: JGDC01000085.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.87, whole genome shotgun sequence (7021 bp)
Overview 1 RT 1: 571-5075 bp Neighborhood of RT #1 [571, 5075] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 571-1737 bp Feature: domain Description: Arm-DNA-bind_5 Location: 607-856 bp Feature: domain Description: Arm-DNA-bind_5 Location: 607-856 bp Feature: domain Description: Phage_int_SAM_5 Location: 895-1201 bp Feature: domain Description: Phage_int_SAM_5 Location: 895-1201 bp Feature: domain Description: INTN1_C_like Location: 1255-1720 bp Feature: domain Description: INTN1_C_like Location: 1255-1720 bp Feature: gene Location: 2387-4096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552-3374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552-3 3 74 bp Feature: domain Description: Intron_maturas2 Location: 3500-3755 bp Feature: domain Description: Intron_maturas2 Location: 3 500-3 755 bp Feature: domain Description: HNHc Note: nucleases Location: 3929-4070 bp Feature: domain Description: HNHc Note: nucleases Location: 3 929-4070 bp Feature: gene Location: 4316-4708 bp Feature: gene Location: 4884-5075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: JGDC01000176.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.180, whole genome shotgun sequence (69709 bp)
Overview 1 RT 1: 65070-69709 bp Neighborhood of RT #1 [65070, 69709] Relaxase YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 65070-66317 bp Feature: domain Description: Relaxase Location: 65232-65634 bp Feature: domain Description: Relaxase Location: 65232-65634 bp Feature: gene Location: 66347-67273 bp Feature: domain Description: YWFCY Location: 66356-66533 bp Feature: domain Description: YWFCY Location: 66356-66533 bp Feature: gene Location: 67970-69562 bp Feature: RT Description: RVT_N Location: 67973-68207 bp Feature: RT Description: RVT_N Location: 67973-68207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68252-68900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68252-68900 bp Feature: domain Description: GIIM Note: maturase Location: 68954-69185 bp Feature: domain Description: GIIM Note: maturase Location: 68954 -69185 bp Feature: gene Location: 69603-69709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDC01000198.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.202, whole genome shotgun sequence (42779 bp)
Overview 1 RT 1: 37501-42673 bp Neighborhood of RT #1 [37501, 42779] DUF1896 N6_Mtase COG4646 RVT-GII Feature: gene Location: 37501-37941 bp Feature: domain Description: DUF1896 Location: 37522-37939 bp Feature: domain Description: DUF1896 Location: 375 22-37939 bp Feature: gene Location: 37931-41035 bp Feature: domain Description: N6_Mtase Location: 38243-38894 bp Feature: domain Description: N6_Mtase Location: 38243-38894 bp Feature: domain Description: COG4646 Location: 40157-41024 bp Feature: domain Description: COG4646 Location: 4015 7-41024 bp Feature: gene Location: 41587-42779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41851-42673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185 1-42673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII

Seq: JGDC01000165.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.169, whole genome shotgun sequence (49273 bp)
Overview 1 RT 1: 6582-10966 bp 2 RT 2: 20681-25860 bp Neighborhood of RT #1 [6582, 10986] Avd_like RVT-DGRs YbdN Neighborhood of RT #2 [20681, 25874] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 6582-7064 bp Feature: gene Location: 7082-7453 bp Feature: domain Description: Avd_like Location: 7109-7412 bp Feature: domain Description: Avd_like Location: 7109-7412 bp Feature: gene Location: 8215-9288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8218-8887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8218-8887 bp Feature: gene Location: 9263-9703 bp Feature: gene Location: 9787-10986 bp Feature: domain Description: YbdN Location: 9802-10966 bp Feature: domain Description: YbdN Location: 9802-1096 6 bp Feature: gene Location: 20681-22708 bp Feature: domain Description: Bac_Flav_CT_G Location: 20684-22703 bp Feature: domain Description: Bac_Flav_CT_G Location: 206 84-22703 bp Feature: gene Location: 23088-23249 bp Feature: gene Location: 23332-24990 bp Feature: RT Description: RVT_N Location: 23386-23629 bp Feature: RT Description: RVT_N Location: 23386 -236 29 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23674-24325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236 74-24325 bp Feature: domain Description: GIIM Note: maturase Location: 24376-24610 bp Feature: domain Description: GIIM Note: maturase Location: 24376 -246 10 bp Feature: gene Location: 24993-25595 bp Feature: domain Description: Bac_Flav_CT_G Location: 25107-25569 bp Feature: domain Description: Bac_Flav_CT_G Location: 25107-2556 9 bp Feature: gene Location: 25602-25874 bp Feature: domain Description: DUF3876 Location: 25629-25860 bp Feature: domain Description: DUF3876 Location: 256 29-2586 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: JGDC01000367.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.372, whole genome shotgun sequence (36184 bp)
Overview 1 RT 1: 31592-36182 bp Neighborhood of RT #1 [31592, 36184] HlyD_D23 HMA OEP OEP matK RVT-GII Feature: gene Location: 31592-33238 bp Feature: domain Description: HlyD_D23 Location: 31991-32609 bp Feature: domain Description: HlyD_D23 Location: 31991-32609 bp Feature: domain Description: HMA Location: 33005-33164 bp Feature: domain Description: HMA Location: 33005-33164 bp Feature: gene Location: 33270-34607 bp Feature: domain Description: OEP Location: 33414-33654 bp Feature: domain Description: OEP Location: 33414-33654 bp Feature: domain Description: OEP Location: 34050-34599 bp Feature: domain Description: OEP Location: 34050-34599 bp Feature: gene Location: 35153-36184 bp Feature: domain Description: matK Location: 35222-35381 bp Feature: domain Description: matK Location: 35222-35381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35417-36182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35417 -36182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyD_D23 (pfam16576), HMA (pfam00403), OEP (pfam02321), matK (CHL00002), RVT-GII

Seq: JGDC01000188.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.192, whole genome shotgun sequence (28036 bp)
Overview 1 RT 1: 20-2352 bp Neighborhood of RT #1 [20, 2420] RVT-Retrons COG3943 Feature: gene Location: 20-877 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182-707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18 2-707 bp Feature: gene Location: 908-1789 bp Feature: gene Location: 2055-2420 bp Feature: domain Description: COG3943 Location: 2094-2352 bp Feature: domain Description: COG3943 Location: 2094-2352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons

Seq: JGDC01000303.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.308, whole genome shotgun sequence (100759 bp)
Overview 1 RT 1: 40844-50738 bp Neighborhood of RT #1 [40844, 50738] RVT-DGRs pfam08757 Feature: gene Location: 40844-41092 bp Feature: gene Location: 41269-41748 bp Feature: gene Location: 41748-43043 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41958-42636 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 419 58-42636 bp Feature: gene Location: 43528-50427 bp Feature: domain Description: pfam08757 Location: 47236-47731 bp Feature: domain Description: pfam08757 Location: 47236-47731 bp Feature: gene Location: 50433-50738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, pfam08757 (CotH;CotH kinase protein)

Seq: JGDC01000016.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.15, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 259-1999 bp Neighborhood of RT #1 [259, 2047] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 259-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523-1345 bp Feature: domain Description: Intron_maturas2 Location: 1534-1744 bp Feature: domain Description: Intron_maturas2 Location: 1534-1744 bp Feature: domain Description: HNHc Note: nucleases Location: 1894-1999 bp Feature: domain Description: HNHc Note: nucleases Location: 1894-1999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDC01000232.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.236, whole genome shotgun sequence (25039 bp)
Overview 1 RT 1: 11163-16675 bp Neighborhood of RT #1 [11163, 16686] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 11163-11486 bp Feature: domain Description: DUF4133 Location: 11178-11445 bp Feature: domain Description: DUF4133 Location: 11 178-11 445 bp Feature: gene Location: 11483-12421 bp Feature: domain Description: Bac_Flav_CT_G Location: 11486-12407 bp Feature: domain Description: Bac_Flav_CT_G Location: 11 486-12407 bp Feature: gene Location: 13005-14666 bp Feature: RT Description: RVT_N Location: 13059-13302 bp Feature: RT Description: RVT_N Location: 13059-13302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13347-13995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13347-13995 bp Feature: domain Description: GIIM Note: maturase Location: 14049-14280 bp Feature: domain Description: GIIM Note: maturase Location: 14049-14280 bp Feature: gene Location: 14663-16357 bp Feature: domain Description: Bac_Flav_CT_G Location: 14783-16349 bp Feature: domain Description: Bac_Flav_CT_G Location: 14783-16349 bp Feature: gene Location: 16372-16686 bp Feature: domain Description: DUF3876 Location: 16426-16675 bp Feature: domain Description: DUF3876 Location: 16426-16675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: JGDC01000089.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.91, whole genome shotgun sequence (14613 bp)
Overview 1 RT 1: 7-2227 bp Neighborhood of RT #1 [7, 2253] RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 7-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-598 bp Feature: domain Description: GIIM Note: maturase Location: 649-883 bp Feature: domain Description: GIIM Note: maturase Location: 649-883 bp Feature: gene Location: 1266-1856 bp Feature: domain Description: Bac_Flav_CT_G Location: 1380-1839 bp Feature: domain Description: Bac_Flav_CT_G Location: 1380-1839 bp Feature: gene Location: 1879-2253 bp Feature: domain Description: DUF3876 Location: 1957-2227 bp Feature: domain Description: DUF3876 Location: 1957-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), RVT-GII, GIIM (pfam08388)

Seq: JGDC01000177.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.181, whole genome shotgun sequence (61154 bp)
Overview 1 RT 1: 1-11566 bp Neighborhood of RT #1 [1, 11826] RVT-GII N6_Mtase N6_Mtase COG4646 DUF1896 Topoisom_bac Toprim_Crpt RVT-GII Intron_maturas2 PRK07726 DUF4099 DUF3945 DUF3945 Feature: gene Location: 1-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: gene Location: 1817-5026 bp Feature: domain Description: N6_Mtase Location: 2129-2237 bp Feature: domain Description: N6_Mtase Location: 2129-2237 bp Feature: domain Description: N6_Mtase Location: 2375-2744 bp Feature: domain Description: N6_Mtase Location: 2375-2744 bp Feature: domain Description: COG4646 Location: 4079-5009 bp Feature: domain Description: COG4646 Location: 4079-5009 bp Feature: gene Location: 5016-5468 bp Feature: domain Description: DUF1896 Location: 5046-5466 bp Feature: domain Description: DUF1896 Location: 5046-5466 bp Feature: gene Location: 5633-7201 bp Feature: domain Description: Topoisom_bac Location: 5636-6827 bp Feature: domain Description: Topoisom_bac Location: 5636-6827 bp Feature: domain Description: Toprim_Crpt Location: 6983-7160 bp Feature: domain Description: Toprim_Crpt Location: 6983-7160 bp Feature: gene Location: 7476-9278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7740-8562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7740-8562 bp Feature: domain Description: Intron_maturas2 Location: 8637-8961 bp Feature: domain Description: Intron_maturas2 Location: 8637-8961 bp Feature: gene Location: 9845-10207 bp Feature: domain Description: PRK07726 Location: 9848-10205 bp Feature: domain Description: PRK07726 Location: 9848-10205 bp Feature: gene Location: 10270-11826 bp Feature: domain Description: DUF4099 Location: 10741-10984 bp Feature: domain Description: DUF4099 Location: 10741-10984 bp Feature: domain Description: DUF3945 Location: 11083-11254 bp Feature: domain Description: DUF3945 Location: 11083-11254 bp Feature: domain Description: DUF3945 Location: 11470-11566 bp Feature: domain Description: DUF3945 Location: 11470-11566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989), Topoisom_bac (pfam01131), Toprim_Crpt (pfam13342), Intron_maturas2 (pfam01348), PRK07726 (DNA topoisomerase 3)

Seq: JGDC01000045.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.44, whole genome shotgun sequence (7437 bp)
Overview 1 RT 1: 4055-7141 bp Neighborhood of RT #1 [4055, 7437] AtoC RVT-GII Feature: gene Location: 4055-5377 bp Feature: domain Description: AtoC Location: 4061-5360 bp Feature: domain Description: AtoC Location: 4061-5360 bp Feature: gene Location: 5370-5531 bp Feature: gene Location: 6055-7437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6319-7141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6319-714 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), RVT-GII

Seq: JGDC01000183.1 Bacteroides fragilis str. 3998 T(B) 4 gbf3998TB4.contig.187, whole genome shotgun sequence (115923 bp)
Overview 1 RT 1: 44503-53461 bp Neighborhood of RT #1 [44503, 53469] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 44503-46692 bp Feature: domain Description: GlnA3 Location: 44578-46690 bp Feature: domain Description: GlnA3 Location: 44578-46690 bp Feature: gene Location: 46995-49151 bp Feature: gene Location: 49358-50470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49673-50222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49673-50222 bp Feature: gene Location: 50612-52405 bp Feature: domain Description: rpsA Location: 50690-52298 bp Feature: domain Description: rpsA Location: 50690-52298 bp Feature: gene Location: 52555-53469 bp Feature: domain Description: RNase_Z Location: 52570-53461 bp Feature: domain Description: RNase_Z Location: 52570-53461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)