myRT

myRT report for GCA_000598405.1_ASM59840v1

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Seq: JGCP01000776.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.791, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 212-680 bp Neighborhood of RT #1 [212, 682] RVT-GII Feature: gene Location: 212-682 bp Ori: EXY32256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGCP01000173.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.178, whole genome shotgun sequence (19756 bp)
Overview 1 RT 1: 11320-19747 bp Neighborhood of RT #1 [11320, 19756] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 11320-13500 bp Ori: EXY33398.1 Feature: domain Description: GlnA3 Location: 11386-13498 bp Feature: domain Description: GlnA3 Location: 11386-13498 bp Feature: gene Location: 13812-15968 bp Feature: gene Location: 16175-17287 bp Ori: EXY33393.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16490-17039 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16490-17039 bp Feature: gene Location: 17429-19222 bp Ori: EXY33399.1 Feature: domain Description: rpsA Location: 17507-19115 bp Feature: domain Description: rpsA Location: 17507-19115 bp Feature: gene Location: 19372-19756 bp Ori: EXY33405.1 Feature: domain Description: RNase_Z Location: 19387-19747 bp Feature: domain Description: RNase_Z Location: 19387-19747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCP01000249.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.255, whole genome shotgun sequence (3261 bp)
Overview 1 RT 1: 50-3243 bp Neighborhood of RT #1 [50, 3261] Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 50-994 bp Ori: EXY33262.1 Feature: domain Description: Cmr6_III-B Location: 206-983 bp Feature: domain Description: Cmr6_III-B Location: 206-983 bp Feature: gene Location: 1014-3261 bp Ori: EXY33263.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1221-1827 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1221-1827 bp Feature: domain Description: Cas1_I-II-III Location: 2286-3243 bp Feature: domain Description: Cas1_I-II-III Location: 2286-3 243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGCP01001473.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.1505, whole genome shotgun sequence (4620 bp)
Overview 1 RT 1: 1-4620 bp Neighborhood of RT #1 [1, 4620] TMAO_torS AtoC RVT-GII Feature: gene Location: 1-2295 bp Ori: EXY31081.1 Feature: domain Description: TMAO_torS Location: 886-1966 bp Feature: domain Description: TMAO_torS Location: 886-1966 bp Feature: gene Location: 2300-3580 bp Ori: EXY31080.1 Feature: domain Description: AtoC Location: 2303-3575 bp Feature: domain Description: AtoC Location: 2303-3575 bp Feature: gene Location: 4149-4620 bp Ori: EXY31079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4389-4620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 389-4 620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), AtoC (COG2204), RVT-GII

Seq: JGCP01001770.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.1807, whole genome shotgun sequence (7146 bp)
Overview 1 RT 1: 1007-6410 bp Neighborhood of RT #1 [1007, 7024] MFS_LmrB_MDR_like RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 1007-2599 bp Ori: EXY30530.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 1505-2495 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 15 05 -2495 bp Feature: gene Location: 2687-3649 bp Feature: gene Location: 3780-5447 bp Ori: EXY30529.1 Feature: domain Description: RVT_N Location: 3834-4077 bp Feature: domain Description: RVT_N Location: 3834-4077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122-4770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122-4770 bp Feature: domain Description: GIIM Note: maturase Location: 4824-5055 bp Feature: domain Description: GIIM Note: maturase Location: 4824-5 05 5 bp Feature: gene Location: 5589-5705 bp Feature: gene Location: 6104-7024 bp Ori: EXY30531.1 Feature: domain Description: COG4646 Location: 6146-6410 bp Feature: domain Description: COG4646 Location: 6146-6410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_LmrB_MDR_like (cd17503), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JGCP01000596.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.606, whole genome shotgun sequence (10835 bp)
Overview 1 RT 1: 7868-10835 bp Neighborhood of RT #1 [7868, 10835] RVT-DGRs Feature: gene Location: 7868-8248 bp Feature: gene Location: 8245-8622 bp Feature: gene Location: 8636-9823 bp Ori: EXY32598.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8969-9596 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 896 9-9596 bp Feature: gene Location: 9945-10082 bp Feature: gene Location: 10156-10835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGCP01001144.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.1168, whole genome shotgun sequence (3484 bp)
Overview 1 RT 1: 1-2811 bp Neighborhood of RT #1 [1, 2811] TraG-D_C RVT-GII GIIM Feature: gene Location: 1-975 bp Ori: EXY31673.1 Feature: domain Description: TraG-D_C Location: 313-646 bp Feature: domain Description: TraG-D_C Location: 313-646 bp Feature: gene Location: 1135-2427 bp Ori: EXY31671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345-2002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345-2002 bp Feature: domain Description: GIIM Note: maturase Location: 2080-2287 bp Feature: domain Description: GIIM Note: maturase Location: 2080-2287 bp Feature: gene Location: 2692-2811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, GIIM (pfam08388)

Seq: JGCP01000411.1 Bacteroides fragilis str. 3397 T10 gbf3397T10.contig.419, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 16-1655 bp Neighborhood of RT #1 [16, 2047] Spc7 RVT-GII GIIM Feature: gene Location: 16-1152 bp Ori: EXY32927.1 Feature: domain Description: Spc7 Location: 763-1030 bp Feature: domain Description: Spc7 Location: 763-1030 bp Feature: gene Location: 1283-2047 bp Ori: EXY32928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128 6-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1655 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spc7 (smart00787), RVT-GII, GIIM (pfam08388)