myRT

myRT report for GCA_000598425.1_ASM59842v1

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Seq: JGCQ01000113.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.112, whole genome shotgun sequence (3560 bp)
Overview 1 RT 1: 1-3151 bp Neighborhood of RT #1 [1, 3534] TraX TraG_VirD4 VirD4 RVT-GII GIIM Feature: gene Location: 1-584 bp Feature: domain Description: TraX Location: 37-538 bp Feature: domain Description: TraX Location: 37-538 bp Feature: gene Location: 596-2299 bp Feature: domain Description: TraG_VirD4 Location: 821-1181 bp Feature: domain Description: TraG_VirD4 Location: 821 -1 1 81 bp Feature: domain Description: VirD4 Location: 1352-1877 bp Feature: domain Description: VirD4 Location: 1 352-1 877 bp Feature: gene Location: 2296-3534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299-2866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299-2866 bp Feature: domain Description: GIIM Note: maturase Location: 2917-3151 bp Feature: domain Description: GIIM Note: maturase Location: 291 7-31 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), RVT-GII, GIIM (pfam08388), TraG_VirD4, VirD4 (COG3505)

Seq: JGCQ01000078.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.77, whole genome shotgun sequence (2319 bp)
Overview 1 RT 1: 1-1379 bp Neighborhood of RT #1 [1, 1762] RVT_N RVT-GII GIIM Feature: gene Location: 1-110 bp Feature: gene Location: 107-1762 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1094 bp Feature: domain Description: GIIM Note: maturase Location: 1145-1379 bp Feature: domain Description: GIIM Note: maturase Location: 1145-1379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGCQ01000080.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.79, whole genome shotgun sequence (11536 bp)
Overview 1 RT 1: 8515-11356 bp Neighborhood of RT #1 [8515, 11356] HTH_17 RVT-Retrons Feature: gene Location: 8515-8880 bp Feature: domain Description: HTH_17 Location: 8650-8788 bp Feature: domain Description: HTH_17 Location: 8650-8788 bp Feature: gene Location: 9346-9561 bp Feature: gene Location: 9587-10444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9749-10274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9749-10274 bp Feature: gene Location: 10475-11356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons

Seq: JGCQ01000244.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.245, whole genome shotgun sequence (12007 bp)
Overview 1 RT 1: 95-3581 bp Neighborhood of RT #1 [95, 3631] RVT-GII GIIM TraG-D_C DUF1016_N YhcG_C Feature: gene Location: 95-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-4 67 bp Feature: domain Description: GIIM Note: maturase Location: 518-752 bp Feature: domain Description: GIIM Note: maturase Location: 518-752 bp Feature: gene Location: 1132-2532 bp Feature: domain Description: TraG-D_C Location: 1906-2239 bp Feature: domain Description: TraG-D_C Location: 1906-2239 bp Feature: gene Location: 2594-3631 bp Feature: domain Description: DUF1016_N Location: 2651-3056 bp Feature: domain Description: DUF1016_N Location: 2651-3056 bp Feature: domain Description: YhcG_C Location: 3128-3581 bp Feature: domain Description: YhcG_C Location: 3128-3581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), DUF1016_N (pfam17761), YhcG_C, RVT-GII, GIIM (pfam08388)

Seq: JGCQ01000064.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.63, whole genome shotgun sequence (16118 bp)
Overview 1 RT 1: 1-6187 bp Neighborhood of RT #1 [1, 6570] RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 1-105 bp Feature: gene Location: 107-1774 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT_N Location: 161-404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1151-1382 bp Feature: domain Description: GIIM Note: maturase Location: 115 1-1382 bp Feature: gene Location: 1916-2032 bp Feature: gene Location: 2431-6570 bp Feature: domain Description: COG4646 Location: 4120-6187 bp Feature: domain Description: COG4646 Location: 4120-6187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JGCQ01000001.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.0, whole genome shotgun sequence (36276 bp)
Overview 1 RT 1: 19951-25637 bp Neighborhood of RT #1 [19951, 25637] Phage_int_SAM_1 INT_RitC_C_like DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 19951-20982 bp Feature: domain Description: Phage_int_SAM_1 Location: 20017-20266 bp Feature: domain Description: Phage_int_SAM_1 Location: 20017-2026 6 bp Feature: domain Description: INT_RitC_C_like Location: 20350-20902 bp Feature: domain Description: INT_RitC_C_like Location: 20350-20902 bp Feature: gene Location: 21198-21509 bp Feature: domain Description: DUF1738 Location: 21201-21477 bp Feature: domain Description: DUF1738 Location: 21201-21477 bp Feature: gene Location: 22078-23889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22342-23164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22342-2316 4 bp Feature: domain Description: Intron_maturas2 Location: 23302-23542 bp Feature: domain Description: Intron_maturas2 Location: 23302-23542 bp Feature: gene Location: 24011-25204 bp Feature: domain Description: MPTase-PolyVal Location: 24158-24470 bp Feature: domain Description: MPTase-PolyVal Location: 24158-24470 bp Feature: gene Location: 25266-25637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)

Seq: JGCQ01000234.1 Bacteroides fragilis str. 34-F-2 #13 gbf34F213.contig.235, whole genome shotgun sequence (123157 bp)
Overview 1 RT 1: 44450-53409 bp Neighborhood of RT #1 [44450, 53417] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 44450-46639 bp Feature: domain Description: GlnA3 Location: 44525-46637 bp Feature: domain Description: GlnA3 Location: 44525-46637 bp Feature: gene Location: 46942-49098 bp Feature: gene Location: 49305-50417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49620-50169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49620-50169 bp Feature: gene Location: 50559-52352 bp Feature: domain Description: rpsA Location: 50637-52245 bp Feature: domain Description: rpsA Location: 50637 -52245 bp Feature: gene Location: 52503-53417 bp Feature: domain Description: RNase_Z Location: 52518-53409 bp Feature: domain Description: RNase_Z Location: 52518-53409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)