myRT

myRT report for GCA_000598465.1_ASM59846v1

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Seq: JGCX01000134.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.133, whole genome shotgun sequence (177946 bp)
Overview 1 RT 1: 43970-47619 bp Neighborhood of RT #1 [43970, 47619] RVT-DGRs Feature: gene Location: 43970-44338 bp Feature: gene Location: 44347-44775 bp Feature: gene Location: 44738-45925 bp Ori: EXY68055.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45071-45698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45071 -45698 bp Feature: gene Location: 46047-46184 bp Feature: gene Location: 46258-47619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGCX01000066.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.65, whole genome shotgun sequence (63695 bp)
Overview 1 RT 1: 2120-7951 bp Neighborhood of RT #1 [2120, 7951] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 Feature: gene Location: 2120-2530 bp Ori: EXY70033.1 Feature: domain Description: Cas_Cmr5 Location: 2168-2414 bp Feature: domain Description: Cas_Cmr5 Location: 2 168-2 414 bp Feature: gene Location: 2533-3477 bp Ori: EXY69989.1 Feature: domain Description: Cmr6_III-B Location: 2689-3466 bp Feature: domain Description: Cmr6_III-B Location: 2 689-3466 bp Feature: gene Location: 3497-5767 bp Ori: EXY70013.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3704-4310 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3704-4310 bp Feature: domain Description: Cas1_I-II-III Location: 4769-5726 bp Feature: domain Description: Cas1_I-II-III Location: 4769-572 6 bp Feature: gene Location: 7520-7738 bp Ori: EXY69994.1 Feature: domain Description: DUF772 Location: 7562-7730 bp Feature: domain Description: DUF772 Location: 7562 -7730 bp Feature: gene Location: 7796-7951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598)

Seq: JGCX01000029.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.28, whole genome shotgun sequence (246965 bp)
Overview 1 RT 1: 109552-116281 bp Neighborhood of RT #1 [109552, 116289] RVT-Retrons rpsA RNase_Z Feature: gene Location: 109552-109692 bp Feature: gene Location: 109815-111971 bp Feature: gene Location: 112178-113290 bp Ori: EXY71293.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112493-113042 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112493 -113 042 bp Feature: gene Location: 113432-115225 bp Ori: EXY71316.1 Feature: domain Description: rpsA Location: 113510-115118 bp Feature: domain Description: rpsA Location: 113 510-115118 bp Feature: gene Location: 115375-116289 bp Ori: EXY71226.1 Gene: rnz Feature: domain Description: RNase_Z Location: 115390-116281 bp Feature: domain Description: RNase_Z Location: 1153 90-116281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGCX01000030.1 Bacteroides fragilis str. 3986 T(B)9 gbf3986TB9.contig.29, whole genome shotgun sequence (33821 bp)
Overview 1 RT 1: 5004-8408 bp Neighborhood of RT #1 [5004, 8476] HTH_17 RVT-Retrons COG3943 Feature: gene Location: 5004-5369 bp Ori: EXY71170.1 Feature: domain Description: HTH_17 Location: 5139-5277 bp Feature: domain Description: HTH_17 Location: 5139-5277 bp Feature: gene Location: 5835-6050 bp Feature: gene Location: 6130-6933 bp Ori: EXY71162.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6238-6763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6238-6763 bp Feature: gene Location: 6964-7845 bp Feature: gene Location: 8111-8476 bp Ori: EXY71172.1 Feature: domain Description: COG3943 Location: 8150-8408 bp Feature: domain Description: COG394 3 Location: 8150-84 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons, COG3943 (Uncharacterized conserved protein )