myRT

myRT report for GCA_000598645.1_ASM59864v1

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Seq: JGDV01000027.1 Bacteroides fragilis str. J38-1 gbfJ381.contig.26, whole genome shotgun sequence (19701 bp)
Overview 1 RT 1: 8728-13130 bp Neighborhood of RT #1 [8728, 13130] YbdN RVT-DGRs Avd_like Feature: gene Location: 8728-9987 bp Ori: EXZ89826.1 Feature: domain Description: YbdN Location: 8734-9964 bp Feature: domain Description: YbdN Location: 8734-9964 bp Feature: gene Location: 10009-10464 bp Feature: gene Location: 10479-11267 bp Ori: EXZ89837.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10599-10878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0599-1 0878 bp Feature: gene Location: 12259-12630 bp Ori: EXZ89838.1 Feature: domain Description: Avd_like Location: 12286-12589 bp Feature: domain Description: Avd_like Location: 1 2286-1 2589 bp Feature: gene Location: 12648-13130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbdN (COG3969), RVT-DGRs, Avd_like (cd16376)

Seq: JGDV01000020.1 Bacteroides fragilis str. J38-1 gbfJ381.contig.19, whole genome shotgun sequence (182913 bp)
Overview 1 RT 1: 111478-120437 bp Neighborhood of RT #1 [111478, 120445] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 111478-113667 bp Ori: EXZ90303.1 Feature: domain Description: GlnA3 Location: 111553-113665 bp Feature: domain Description: GlnA3 Location: 111553-113665 bp Feature: gene Location: 113970-116126 bp Feature: gene Location: 116333-117445 bp Ori: EXZ90324.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116648-117197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116648-117197 bp Feature: gene Location: 117587-119380 bp Ori: EXZ90392.1 Feature: domain Description: rpsA Location: 117665-119273 bp Feature: domain Description: rpsA Location: 117665-1192 73 bp Feature: gene Location: 119531-120445 bp Ori: EXZ90323.1 Gene: rnz Feature: domain Description: RNase_Z Location: 119546-120437 bp Feature: domain Description: RNase_Z Location: 119546-12 0437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDV01000099.1 Bacteroides fragilis str. J38-1 gbfJ381.contig.98, whole genome shotgun sequence (8355 bp)
Overview 1 RT 1: 491-4022 bp Neighborhood of RT #1 [491, 4138] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 491-2761 bp Ori: EXZ86913.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 698-1304 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 698-13 04 bp Feature: domain Description: Cas1_I-II-III Location: 1763-2720 bp Feature: domain Description: Cas1_I-II-III Location: 1763 -2720 bp Feature: gene Location: 2781-3725 bp Ori: EXZ86914.1 Feature: domain Description: Cmr6_III-B Location: 2937-3714 bp Feature: domain Description: Cmr6_III-B Location: 293 7-3 714 bp Feature: gene Location: 3728-4138 bp Ori: EXZ86915.1 Feature: domain Description: Cas_Cmr5 Location: 3776-4022 bp Feature: domain Description: Cas_Cmr5 Location: 3 776-4022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)