myRT

myRT report for GCA_000598765.2_ASM59876v2

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Seq: JGEV01000024.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.23, whole genome shotgun sequence (896013 bp)
Overview 1 RT 1: 438261-449500 bp 2 RT 2: 544414-550676 bp Neighborhood of RT #1 [438261, 449583] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM ACT_CBS PRK13351 PRK13351 Neighborhood of RT #2 [544414, 550676] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 438261-438713 bp Ori: EYB14362.1 Feature: domain Description: DUF1896 Location: 438291-438711 bp Feature: domain Description: DUF1 896 Location: 438291 -43871 1 bp Feature: gene Location: 438703-443406 bp Ori: EYB14363.1 Feature: domain Description: N6_Mtase Location: 439015-439630 bp Feature: domain Description: N6_Mtase Location: 43901 5-439630 bp Feature: domain Description: COG4646 Location: 440746-443023 bp Feature: domain Description: COG4646 Location: 440746-443023 bp Feature: gene Location: 444066-445733 bp Ori: EYB14364.1 Feature: domain Description: RVT_N Location: 444120-444363 bp Feature: domain Description: RVT_N Location: 4441 20-444363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444408-445056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444408-445056 bp Feature: domain Description: GIIM Note: maturase Location: 445110-445341 bp Feature: domain Description: GIIM Note: maturase Location: 4451 1 0-445341 bp Feature: gene Location: 445933-447000 bp Ori: EYB14365.1 Feature: domain Description: ACT_CBS Location: 446218-446398 bp Feature: domain Description: ACT_CBS Location: 44621 8-446398 bp Feature: gene Location: 447658-449583 bp Ori: EYB14366.1 Gene: tetM Feature: domain Description: PRK13351 Location: 447661-448129 bp Feature: domain Description: PRK1 3351 Location: 447661 -4481 29 bp Feature: domain Description: PRK13351 Location: 448174-449500 bp Feature: domain Description: PRK1 3351 Location: 4481 74-449500 bp Feature: gene Location: 544414-544824 bp Ori: EYB14463.1 Feature: domain Description: Cas_Cmr5 Location: 544462-544708 bp Feature: domain Description: Cas_Cmr5 Location: 544462-544708 bp Feature: gene Location: 544827-545771 bp Ori: EYB14464.1 Feature: domain Description: Cmr6_III-B Location: 544983-545760 bp Feature: domain Description: Cmr6_III-B Location: 544983-545760 bp Feature: gene Location: 545791-548061 bp Ori: EYB14465.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 545998-546604 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 545998-546604 bp Feature: domain Description: Cas1_I-II-III Location: 547063-548020 bp Feature: domain Description: Cas1 _I-II-III Location: 547063-548020 bp Feature: gene Location: 549307-549420 bp Feature: gene Location: 550530-550676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACT_CBS (cd04884), PRK13351 (elongation factor G-like protein), Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661)
RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGEV01000025.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.24, whole genome shotgun sequence (296523 bp)
Overview 1 RT 1: 157145-164675 bp 2 RT 2: 179597-184618 bp Neighborhood of RT #1 [157145, 165670] DUF1896 N6_Mtase COG4646 RVT-GII Intron_maturas2 COG4646 Helicase_C Neighborhood of RT #2 [179597, 184618] Mfa2 BACON RVT-UNC GIIM Feature: gene Location: 157145-157594 bp Ori: EYB13825.1 Feature: domain Description: DUF1896 Location: 157169-157592 bp Feature: domain Description: DUF1896 Location: 157169-157592 bp Feature: gene Location: 157584-160694 bp Ori: EYB13826.1 Feature: domain Description: N6_Mtase Location: 157893-158502 bp Feature: domain Description: N6_Mtase Location: 157893-158502 bp Feature: domain Description: COG4646 Location: 159774-160683 bp Feature: domain Description: COG4646 Location: 159774-160683 bp Feature: gene Location: 161221-163023 bp Ori: EYB13827.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161485-162307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161485-162 307 bp Feature: domain Description: Intron_maturas2 Location: 162460-162715 bp Feature: domain Description: Intron_maturas2 Location: 162 460-162 715 bp Feature: gene Location: 163160-164476 bp Ori: EYB13828.1 Feature: domain Description: COG4646 Location: 163169-164264 bp Feature: domain Description: COG4646 Location: 163169-1642 64 bp Feature: gene Location: 164519-165670 bp Ori: EYB13829.1 Feature: domain Description: Helicase_C Location: 164525-164675 bp Feature: domain Description: Helicase_C Location: 16452 5-164675 bp Feature: gene Location: 179597-182593 bp Ori: EYB13846.1 Feature: domain Description: Mfa2 Location: 179681-180683 bp Feature: domain Description: Mfa2 Location: 179681-180683 bp Feature: domain Description: BACON Location: 180854-181043 bp Feature: domain Description: BACON Location: 180854-181043 bp Feature: gene Location: 182655-182846 bp Feature: gene Location: 182874-184037 bp Ori: EYB13848.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 183045-183525 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 183045-18352 5 bp Feature: domain Description: GIIM Note: maturase Location: 183564-183741 bp Feature: domain Description: GIIM Note: maturase Location: 183564-183741 bp Feature: gene Location: 184043-184213 bp Feature: gene Location: 184307-184618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), Mfa2 (pfam08842), BACON (pfam13004), RVT-UG17/RVT-DGRs/RVT-CRISPR/RVT-GII(RVT-UNC), GIIM (pfam08388)

Seq: JGEV01000020.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.19, whole genome shotgun sequence (575295 bp)
Overview 1 RT 1: 105955-114914 bp Neighborhood of RT #1 [105955, 114922] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 105955-108144 bp Ori: EYB15228.1 Feature: domain Description: GlnA3 Location: 106030-108142 bp Feature: domain Description: GlnA3 Location: 10603 0-108142 bp Feature: gene Location: 108447-110603 bp Feature: gene Location: 110810-111922 bp Ori: EYB15230.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111125-111674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111125-111674 bp Feature: gene Location: 112064-113857 bp Ori: EYB15231.1 Feature: domain Description: rpsA Location: 112142-113750 bp Feature: domain Description: rpsA Location: 112142-113 750 bp Feature: gene Location: 114110-114922 bp Ori: EYB15232.1 Gene: rnz Feature: domain Description: RNase_Z Location: 114113-114914 bp Feature: domain Description: RNase_Z Location: 114113 -114914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)