myRT

myRT report for GCA_000598785.2_ASM59878v2

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Seq: JGEW01000015.1 Bacteroides fragilis str. I1345 gbfI1345.contig.14, whole genome shotgun sequence (63103 bp)
Overview 1 RT 1: 7-2227 bp Neighborhood of RT #1 [7, 2253] RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 7-1263 bp Ori: EYB19793.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0-598 bp Feature: domain Description: GIIM Note: maturase Location: 649-883 bp Feature: domain Description: GIIM Note: maturase Location: 649-883 bp Feature: gene Location: 1266-1856 bp Ori: EYB19794.1 Feature: domain Description: Bac_Flav_CT_G Location: 1380-1839 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 380-1 839 bp Feature: gene Location: 1879-2253 bp Ori: EYB19795.1 Feature: domain Description: DUF3876 Location: 1957-2227 bp Feature: domain Description: DUF3876 Location: 1 957-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: JGEW01000007.1 Bacteroides fragilis str. I1345 gbfI1345.contig.6, whole genome shotgun sequence (49198 bp)
Overview 1 RT 1: 6582-10966 bp 2 RT 2: 20681-25860 bp Neighborhood of RT #1 [6582, 10986] Avd_like RVT-DGRs YbdN Neighborhood of RT #2 [20681, 25874] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 6582-7064 bp Feature: gene Location: 7139-7453 bp Ori: EYB20596.1 Feature: domain Description: Avd_like Location: 7145-7412 bp Feature: domain Description: Avd_like Location: 7145-7412 bp Feature: gene Location: 8215-9288 bp Ori: EYB20597.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8218-8887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82 18-8887 bp Feature: gene Location: 9386-9703 bp Feature: gene Location: 9787-10986 bp Ori: EYB20599.1 Feature: domain Description: YbdN Location: 9802-10966 bp Feature: domain Description: YbdN Location: 9802 -10966 bp Feature: gene Location: 20681-22708 bp Ori: EYB20614.1 Feature: domain Description: Bac_Flav_CT_G Location: 20684-22703 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 0684-2 2 703 bp Feature: gene Location: 23168-23308 bp Feature: gene Location: 23332-24990 bp Ori: EYB20616.1 Feature: domain Description: RVT_N Location: 23386-23629 bp Feature: domain Description: RVT_N Location: 2 3386-2 362 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23674-24325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3674-2 432 5 bp Feature: domain Description: GIIM Note: maturase Location: 24376-24610 bp Feature: domain Description: GIIM Note: maturase Location: 2 4376-2 4610 bp Feature: gene Location: 24993-25595 bp Ori: EYB20617.1 Feature: domain Description: Bac_Flav_CT_G Location: 25107-25569 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 5107-2 5569 bp Feature: gene Location: 25602-25874 bp Ori: EYB20618.1 Feature: domain Description: DUF3876 Location: 25629-25860 bp Feature: domain Description: DUF3876 Location: 2 562 9-2 5860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: JGEW01000012.1 Bacteroides fragilis str. I1345 gbfI1345.contig.11, whole genome shotgun sequence (368740 bp)
Overview 1 RT 1: 126281-133010 bp Neighborhood of RT #1 [126281, 133018] RVT-Retrons rpsA RNase_Z Feature: gene Location: 126281-126421 bp Feature: gene Location: 126613-128700 bp Feature: gene Location: 128907-130019 bp Ori: EYB20199.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129222-129771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129222-129771 bp Feature: gene Location: 130161-131954 bp Ori: EYB20200.1 Feature: domain Description: rpsA Location: 130239-131847 bp Feature: domain Description: rpsA Location: 13 023 9-13 1847 bp Feature: gene Location: 132104-133018 bp Ori: EYB20201.1 Gene: rnz Feature: domain Description: RNase_Z Location: 132119-133010 bp Feature: domain Description: RNase_Z Location: 13 2119-13 3 010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGEW01000032.1 Bacteroides fragilis str. I1345 gbfI1345.contig.31, whole genome shotgun sequence (609336 bp)
Overview 1 RT 1: 186444-191164 bp Neighborhood of RT #1 [186444, 191164] Dam RVT-DGRs Feature: gene Location: 186444-187286 bp Ori: EYB17484.1 Feature: domain Description: Dam Location: 186447-187215 bp Feature: domain Description: Dam Location: 1864 4 7-187215 bp Feature: gene Location: 187473-187883 bp Feature: gene Location: 187897-189120 bp Ori: EYB17486.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187984-188644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 187984 -18864 4 bp Feature: gene Location: 189121-189261 bp Feature: gene Location: 189728-191164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: JGEW01000014.1 Bacteroides fragilis str. I1345 gbfI1345.contig.13, whole genome shotgun sequence (184518 bp)
Overview 1 RT 1: 180063-184515 bp Neighborhood of RT #1 [180063, 184518] DUF1896 N6_Mtase COG4646 RVT-GII Feature: gene Location: 180063-180503 bp Ori: EYB20019.1 Feature: domain Description: DUF1896 Location: 180084-180501 bp Feature: domain Description: DUF1896 Location: 180084-1805 01 bp Feature: gene Location: 180493-183597 bp Ori: EYB20020.1 Feature: domain Description: N6_Mtase Location: 180805-181456 bp Feature: domain Description: N6_Mtase Location: 180805 -18145 6 bp Feature: domain Description: COG4646 Location: 182719-183586 bp Feature: domain Description: COG4646 Location: 182719-1835 86 bp Feature: gene Location: 184149-184518 bp Ori: EYB20021.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184413-184515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184413-1845 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII

Seq: JGEW01000011.1 Bacteroides fragilis str. I1345 gbfI1345.contig.10, whole genome shotgun sequence (31413 bp)
Overview 1 RT 1: 25962-31230 bp Neighborhood of RT #1 [25962, 31413] DUF1896 N6_Mtase N6_Mtase COG4646 RVT-GII Feature: gene Location: 25962-26414 bp Ori: EYB20405.1 Feature: domain Description: DUF1896 Location: 25992-26412 bp Feature: domain Description: DUF1896 Location: 25992-26 412 bp Feature: gene Location: 26404-29592 bp Ori: EYB20406.1 Feature: domain Description: N6_Mtase Location: 26716-26824 bp Feature: domain Description: N6 _Mtase Location: 26 716 -26 824 bp Feature: domain Description: N6_Mtase Location: 26962-27319 bp Feature: domain Description: N6 _Mtase Location: 26 96 2-27319 bp Feature: domain Description: COG4646 Location: 28678-29581 bp Feature: domain Description: COG46 46 Location: 286 78-29581 bp Feature: gene Location: 30144-31413 bp Ori: EYB20407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30408-31230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30408-31230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII

Seq: JGEW01000077.1 Bacteroides fragilis str. I1345 gbfI1345.contig.76, whole genome shotgun sequence (27171 bp)
Overview 1 RT 1: 953-6745 bp Neighborhood of RT #1 [953, 6825] COG4646 HepA RVT_N RVT-GII GIIM mpi Feature: gene Location: 953-2437 bp Ori: EYB16527.1 Feature: domain Description: COG4646 Location: 962-2057 bp Feature: domain Description: COG4646 Location: 962-2057 bp Feature: domain Description: HepA Location: 2285-2420 bp Feature: domain Description: HepA Location: 2285-2420 bp Feature: gene Location: 2836-2952 bp Feature: gene Location: 3094-4761 bp Ori: EYB16529.1 Feature: domain Description: RVT_N Location: 3148-3391 bp Feature: domain Description: RVT_N Location: 3148-3391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436-4084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3436-4084 bp Feature: domain Description: GIIM Note: maturase Location: 4138-4369 bp Feature: domain Description: GIIM Note: maturase Location: 4138-4369 bp Feature: gene Location: 4763-6052 bp Feature: gene Location: 6169-6825 bp Ori: EYB16531.1 Feature: domain Description: mpi Location: 6172-6745 bp Feature: domain Description: mpi Location: 617 2-67 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), HepA (COG0553), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), mpi (PRK13413)