myRT

myRT report for GCA_000598805.1_ASM59880v1

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Seq: JGDG01000480.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.493, whole genome shotgun sequence (14633 bp)
Overview 1 RT 1: 29-2281 bp Neighborhood of RT #1 [29, 2281] matK RVT-GII Intron_maturas2 Feature: gene Location: 29-1831 bp Ori: EXZ12898.1 Feature: domain Description: matK Location: 98-257 bp Feature: domain Description: matK Location: 98-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-1 1 1 5 bp Feature: domain Description: Intron_maturas2 Location: 1274-1499 bp Feature: domain Description: Intron_maturas2 Location: 1 274-1 499 bp Feature: gene Location: 1938-2132 bp Feature: gene Location: 2129-2281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JGDG01000087.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.86, whole genome shotgun sequence (23997 bp)
Overview 1 RT 1: 1-3219 bp 2 RT 2: 12919-17323 bp Neighborhood of RT #1 [1, 3224] RVT_N RVT-GII Bac_Flav_CT_G Neighborhood of RT #2 [12919, 17323] YbdN RVT-DGRs Avd_like Feature: gene Location: 1-573 bp Ori: EXZ16202.1 Feature: domain Description: RVT_N Location: 55-298 bp Feature: domain Description: RVT_N Location: 55-2 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-574 bp Feature: gene Location: 656-817 bp Feature: gene Location: 1197-3224 bp Ori: EXZ16204.1 Feature: domain Description: Bac_Flav_CT_G Location: 1200-3219 bp Feature: domain Description: Bac_Flav_CT_G Location: 12 00-32 19 bp Feature: gene Location: 12919-14118 bp Ori: EXZ16219.1 Feature: domain Description: YbdN Location: 12934-14098 bp Feature: domain Description: YbdN Location: 12 934-14098 bp Feature: gene Location: 14202-14642 bp Feature: gene Location: 14617-15690 bp Ori: EXZ16221.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14620-15247 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1462 0-152 47 bp Feature: gene Location: 16452-16823 bp Ori: EXZ16222.1 Feature: domain Description: Avd_like Location: 16479-16782 bp Feature: domain Description: Avd_like Location: 16479-16782 bp Feature: gene Location: 16841-17323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Bac_Flav_CT_G (TIGR03783), YbdN (COG3969), RVT-DGRs, Avd_like (cd16376)

Seq: JGDG01000479.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.492, whole genome shotgun sequence (36823 bp)
Overview 1 RT 1: 32893-36820 bp Neighborhood of RT #1 [32893, 36823] HlyD_D23 HMA OEP OEP RVT-GII Feature: gene Location: 32893-34539 bp Ori: EXZ12937.1 Feature: domain Description: HlyD_D23 Location: 33292-33910 bp Feature: domain Description: HlyD_D23 Location: 3 3 292-3 3 910 bp Feature: domain Description: HMA Location: 34306-34465 bp Feature: domain Description: HMA Location: 3 43 06-3 4465 bp Feature: gene Location: 34571-35908 bp Ori: EXZ12938.1 Feature: domain Description: OEP Location: 34715-34955 bp Feature: domain Description: OEP Location: 3 4715-3 4955 bp Feature: domain Description: OEP Location: 35351-35900 bp Feature: domain Description: OEP Location: 3 53 51-3 5900 bp Feature: gene Location: 36454-36823 bp Ori: EXZ12939.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36718-36820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6718-3 6820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyD_D23 (pfam16576), HMA (pfam00403), OEP (pfam02321), RVT-GII

Seq: JGDG01000346.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.357, whole genome shotgun sequence (27242 bp)
Overview 1 RT 1: 1-1617 bp Neighborhood of RT #1 [1, 1631] RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 1-747 bp Ori: EXZ14262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -82 bp Feature: domain Description: GIIM Note: maturase Location: 133-367 bp Feature: domain Description: GIIM Note: maturase Location: 133-367 bp Feature: gene Location: 750-1352 bp Ori: EXZ14263.1 Feature: domain Description: Bac_Flav_CT_G Location: 864-1326 bp Feature: domain Description: Bac_Flav_CT_G Location: 864 -1326 bp Feature: gene Location: 1359-1631 bp Ori: EXZ14264.1 Feature: domain Description: DUF3876 Location: 1386-1617 bp Feature: domain Description: DUF3876 Location: 1386-1617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: JGDG01000415.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.426, whole genome shotgun sequence (17239 bp)
Overview 1 RT 1: 12670-17236 bp Neighborhood of RT #1 [12670, 17239] DUF1896 N6_Mtase N6_Mtase COG4646 RVT-GII Feature: gene Location: 12670-13122 bp Ori: EXZ13697.1 Feature: domain Description: DUF1896 Location: 12700-13120 bp Feature: domain Description: DUF1896 Location: 12700-13120 bp Feature: gene Location: 13112-16318 bp Ori: EXZ13698.1 Feature: domain Description: N6_Mtase Location: 13424-13532 bp Feature: domain Description: N6_Mtase Location: 13424-135 32 bp Feature: domain Description: N6_Mtase Location: 13670-14042 bp Feature: domain Description: N6_Mtase Location: 13670-14042 bp Feature: domain Description: COG4646 Location: 15155-16307 bp Feature: domain Description: COG4646 Location: 15 15 5 -16307 bp Feature: gene Location: 16870-17239 bp Ori: EXZ13699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17134-17236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17134-17236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII

Seq: JGDG01000106.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.106, whole genome shotgun sequence (1032 bp)
Overview 1 RT 1: 1-469 bp Neighborhood of RT #1 [1, 469] RVT-GII Feature: gene Location: 1-469 bp Ori: EXZ16147.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 5-46 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGDG01000239.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.244, whole genome shotgun sequence (78753 bp)
Overview 1 RT 1: 10646-19605 bp Neighborhood of RT #1 [10646, 19613] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 10646-12835 bp Ori: EXZ15088.1 Feature: domain Description: GlnA3 Location: 10721-12833 bp Feature: domain Description: GlnA3 Location: 107 21-12833 bp Feature: gene Location: 13138-15294 bp Feature: gene Location: 15501-16613 bp Ori: EXZ15090.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15816-16365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15816-16365 bp Feature: gene Location: 16755-18548 bp Ori: EXZ15091.1 Feature: domain Description: rpsA Location: 16833-18441 bp Feature: domain Description: rpsA Location: 16833-18441 bp Feature: gene Location: 18699-19613 bp Ori: EXZ15092.1 Gene: rnz Feature: domain Description: RNase_Z Location: 18714-19605 bp Feature: domain Description: RNase_Z Location: 187 14-19605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDG01000054.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.53, whole genome shotgun sequence (933 bp)
Overview 1 RT 1: 1-922 bp Neighborhood of RT #1 [1, 933] RVT-CRISPR Cmr6_III-B Feature: gene Location: 1-770 bp Ori: EXZ16346.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208-769 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208 -769 bp Feature: gene Location: 790-933 bp Ori: EXZ16347.1 Feature: domain Description: Cmr6_III-B Location: 814-922 bp Feature: domain Description: Cmr6_III-B Location: 8 14-922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cmr6_III-B (cd09661)

Seq: JGDG01000416.1 Bacteroides fragilis str. Ds-233 gbfDs233.contig.427, whole genome shotgun sequence (46310 bp)
Overview 1 RT 1: 7691-12983 bp Neighborhood of RT #1 [7691, 13018] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 7691-9724 bp Ori: EXZ13637.1 Feature: domain Description: Bac_Flav_CT_G Location: 7694-9719 bp Feature: domain Description: Bac_Flav_CT_G Location: 769 4-9 719 bp Feature: gene Location: 10104-10265 bp Feature: gene Location: 10348-12006 bp Ori: EXZ13639.1 Feature: domain Description: RVT_N Location: 10402-10645 bp Feature: domain Description: RVT_N Location: 10402-10645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10690-11341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1069 0-11341 bp Feature: domain Description: GIIM Note: maturase Location: 11392-11626 bp Feature: domain Description: GIIM Note: maturase Location: 1139 2-11626 bp Feature: gene Location: 12009-12599 bp Ori: EXZ13640.1 Feature: domain Description: Bac_Flav_CT_G Location: 12123-12582 bp Feature: domain Description: Bac_Flav_CT_G Location: 12123-12582 bp Feature: gene Location: 12638-13018 bp Ori: EXZ13641.1 Feature: domain Description: DUF3876 Location: 12719-12983 bp Feature: domain Description: DUF3876 Location: 12719 -129 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)