myRT

myRT report for GCA_000598825.1_ASM59882v1

Download annotations/find similar RTs

Seq: JGDM01000018.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.18, whole genome shotgun sequence (123339 bp)
Overview 1 RT 1: 44444-53403 bp Neighborhood of RT #1 [44444, 53411] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 44444-46624 bp Ori: EXZ45790.1 Feature: domain Description: GlnA3 Location: 44510-46622 bp Feature: domain Description: GlnA3 Location: 4451 0-46622 bp Feature: gene Location: 46936-49092 bp Feature: gene Location: 49299-50411 bp Ori: EXZ45792.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49614-50163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4961 4-501 63 bp Feature: gene Location: 50553-52346 bp Ori: EXZ45793.1 Feature: domain Description: rpsA Location: 50631-52239 bp Feature: domain Description: rpsA Location: 50631 -52239 bp Feature: gene Location: 52497-53411 bp Ori: EXZ45794.1 Gene: rnz Feature: domain Description: RNase_Z Location: 52512-53403 bp Feature: domain Description: RNase_Z Location: 5251 2-53403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDM01000143.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.146, whole genome shotgun sequence (7478 bp)
Overview 1 RT 1: 50-4252 bp Neighborhood of RT #1 [50, 4275] DUF4372 DDE_Tnp_1 RVT-GII Intron_maturas2 HTH_17 RteC Feature: gene Location: 50-223 bp Feature: gene Location: 254-1306 bp Ori: EXZ42037.1 Feature: domain Description: DUF4372 Location: 257-356 bp Feature: domain Description: DUF4372 Location: 2 57-356 bp Feature: domain Description: DDE_Tnp_1 Location: 497-1121 bp Feature: domain Description: DDE_Tnp_1 Location: 497-112 1 bp Feature: gene Location: 1270-3171 bp Ori: EXZ42038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1699-2524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1699-2 52 4 bp Feature: domain Description: Intron_maturas2 Location: 2638-2917 bp Feature: domain Description: Intron_maturas2 Location: 2 638-2 917 bp Feature: gene Location: 3523-3816 bp Ori: EXZ42039.1 Feature: domain Description: HTH_17 Location: 3652-3766 bp Feature: domain Description: HTH_17 Location: 3652 -3766 bp Feature: gene Location: 3946-4275 bp Ori: EXZ42040.1 Feature: domain Description: RteC Location: 4015-4252 bp Feature: domain Description: RteC Location: 4015-42 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HTH_17 (pfam12728), RteC (pfam09357)

Seq: JGDM01000124.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.124, whole genome shotgun sequence (42349 bp)
Overview 1 RT 1: 35339-41837 bp Neighborhood of RT #1 [35339, 42229] DUF1896 COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 35339-35776 bp Ori: EXZ42183.1 Feature: domain Description: DUF1896 Location: 35360-35774 bp Feature: domain Description: DUF1896 Location: 3 53 60-3 5774 bp Feature: gene Location: 35766-39905 bp Ori: EXZ42184.1 Feature: domain Description: COG4646 Location: 37455-39522 bp Feature: domain Description: COG4646 Location: 3 7455-3 9522 bp Feature: gene Location: 40562-42229 bp Ori: EXZ42185.1 Feature: domain Description: RVT_N Location: 40616-40859 bp Feature: domain Description: RVT_N Location: 40616-40859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40904-41552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40904-41552 bp Feature: domain Description: GIIM Note: maturase Location: 41606-41837 bp Feature: domain Description: GIIM Note: maturase Location: 41606-4183 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDM01000159.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.162, whole genome shotgun sequence (10893 bp)
Overview 1 RT 1: 7532-10510 bp Neighborhood of RT #1 [7532, 10893] AbiEi_3_N AbiEi_3 VirD4 RVT-GII GIIM Feature: gene Location: 7532-8296 bp Ori: EXZ41970.1 Feature: domain Description: AbiEi_3_N Location: 7550-7823 bp Feature: domain Description: AbiEi_3_N Location: 7550-7823 bp Feature: domain Description: AbiEi_3 Location: 7835-8273 bp Feature: domain Description: AbiEi_3 Location: 7835-8273 bp Feature: gene Location: 8525-10093 bp Ori: EXZ41971.1 Feature: domain Description: VirD4 Location: 9308-9620 bp Feature: domain Description: VirD4 Location: 9308-9620 bp Feature: gene Location: 10090-10893 bp Ori: EXZ41972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10099-10225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10099-10225 bp Feature: domain Description: GIIM Note: maturase Location: 10276-10510 bp Feature: domain Description: GIIM Note: maturase Location: 10276-10510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), VirD4 (COG3505), RVT-GII, GIIM (pfam08388)

Seq: JGDM01000182.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.185, whole genome shotgun sequence (25261 bp)
Overview 1 RT 1: 671-5110 bp Neighborhood of RT #1 [671, 5110] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 671-982 bp Ori: EXZ41806.1 Feature: domain Description: DUF1738 Location: 674-950 bp Feature: domain Description: DUF1738 Location: 674-95 0 bp Feature: gene Location: 1551-3362 bp Ori: EXZ41807.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815-2637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1815 -2637 bp Feature: domain Description: Intron_maturas2 Location: 2775-3015 bp Feature: domain Description: Intron_maturas2 Location: 2775 -3015 bp Feature: gene Location: 3484-4677 bp Ori: EXZ41808.1 Feature: domain Description: MPTase-PolyVal Location: 3631-3943 bp Feature: domain Description: MPTase-PolyVal Location: 3631-3943 bp Feature: gene Location: 4739-5110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)

Seq: JGDM01000022.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.22, whole genome shotgun sequence (116339 bp)
Overview 1 RT 1: 1-3250 bp Neighborhood of RT #1 [1, 3300] RVT-GII GIIM TraG-D_C DUF1016_N YhcG_C Feature: gene Location: 1-804 bp Ori: EXZ45421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-136 bp Feature: domain Description: GIIM Note: maturase Location: 187-421 bp Feature: domain Description: GIIM Note: maturase Location: 187-421 bp Feature: gene Location: 801-2201 bp Ori: EXZ45422.1 Feature: domain Description: TraG-D_C Location: 1575-1908 bp Feature: domain Description: TraG-D_C Location: 1575-1908 bp Feature: gene Location: 2263-3300 bp Ori: EXZ45423.1 Feature: domain Description: DUF1016_N Location: 2320-2725 bp Feature: domain Description: DUF1016 _N Location: 2320-2725 bp Feature: domain Description: YhcG_C Location: 2797-3250 bp Feature: domain Description: YhcG_C Location: 2797-3250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF1016_N (pfam17761), YhcG_C

Seq: JGDM01000021.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.21, whole genome shotgun sequence (161541 bp)
Overview 1 RT 1: 17660-20453 bp Neighborhood of RT #1 [17660, 20521] RVT-Retrons COG3943 Feature: gene Location: 17660-17794 bp Feature: gene Location: 17937-18158 bp Feature: gene Location: 18184-19041 bp Ori: EXZ45540.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18346-18871 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18346-1887 1 bp Feature: gene Location: 19072-19953 bp Feature: gene Location: 20219-20521 bp Ori: EXZ45542.1 Feature: domain Description: COG3943 Location: 20228-20453 bp Feature: domain Description: COG3943 Location: 20228-20453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: JGDM01000171.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.174, whole genome shotgun sequence (3018 bp)
Overview 1 RT 1: 1-2984 bp Neighborhood of RT #1 [1, 3018] RVT-GII GIIM TraG_VirD4 VirD4 TraX Feature: gene Location: 1-804 bp Ori: EXZ41872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-136 bp Feature: domain Description: GIIM Note: maturase Location: 187-421 bp Feature: domain Description: GIIM Note: maturase Location: 18 7-421 bp Feature: gene Location: 801-2504 bp Ori: EXZ41873.1 Feature: domain Description: TraG_VirD4 Location: 1026-1386 bp Feature: domain Description: TraG_VirD4 Location: 1026-138 6 bp Feature: domain Description: VirD4 Location: 1557-2082 bp Feature: domain Description: VirD4 Location: 1557-208 2 bp Feature: gene Location: 2516-3018 bp Ori: EXZ41874.1 Feature: domain Description: TraX Location: 2552-2984 bp Feature: domain Description: TraX Location: 2552-298 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TraG_VirD4, VirD4 (COG3505), TraX (pfam05857)

Seq: JGDM01000127.1 Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.128, whole genome shotgun sequence (29738 bp)
Overview 1 RT 1: 17421-20961 bp Neighborhood of RT #1 [17421, 20975] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 17421-17714 bp Ori: EXZ42128.1 Feature: domain Description: DUF4133 Location: 17460-17640 bp Feature: domain Description: DUF4133 Location: 17460-17640 bp Feature: gene Location: 17728-17850 bp Ori: EXZ42129.1 Feature: domain Description: DUF4134 Location: 17746-17836 bp Feature: domain Description: DUF4134 Location: 17746-17836 bp Feature: gene Location: 17947-19758 bp Ori: EXZ42130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18211-19033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18211-19 033 bp Feature: domain Description: Intron_maturas2 Location: 19222-19432 bp Feature: domain Description: Intron_maturas2 Location: 19 222-19 432 bp Feature: domain Description: HNHc Note: nucleases Location: 19582-19687 bp Feature: domain Description: HNHc Note: nucleases Location: 19 582-19 687 bp Feature: gene Location: 20300-20518 bp Ori: EXZ42131.1 Feature: domain Description: DUF4134 Location: 20306-20501 bp Feature: domain Description: DUF4134 Location: 20306-20501 bp Feature: gene Location: 20652-20975 bp Ori: EXZ42132.1 Feature: domain Description: DUF4134 Location: 20676-20961 bp Feature: domain Description: DUF4134 Location: 20676-209 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)