myRT

myRT report for GCA_000598845.1_ASM59884v1

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Seq: JGDP01000090.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.89, whole genome shotgun sequence (335248 bp)
Overview 1 RT 1: 306032-309638 bp Neighborhood of RT #1 [306032, 309679] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 306032-306442 bp Ori: EXZ58201.1 Feature: domain Description: Cas_Cmr5 Location: 306080-306326 bp Feature: domain Description: Cas_Cmr5 Location: 306080-306326 bp Feature: gene Location: 306445-307389 bp Ori: EXZ58202.1 Feature: domain Description: Cmr6_III-B Location: 306601-307378 bp Feature: domain Description: Cmr6_III-B Location: 306601 -307378 bp Feature: gene Location: 307409-309679 bp Ori: EXZ58203.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 307616-308222 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 30761 6-308222 bp Feature: domain Description: Cas1_I-II-III Location: 308681-309638 bp Feature: domain Description: Cas1 _I-II-III Location: 308681 -309638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGDP01000072.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.71, whole genome shotgun sequence (26336 bp)
Overview 1 RT 1: 2495-6898 bp Neighborhood of RT #1 [2495, 6898] YbdN RVT-DGRs Avd_like Feature: gene Location: 2495-3703 bp Ori: EXZ58805.1 Feature: domain Description: YbdN Location: 2519-3680 bp Feature: domain Description: YbdN Location: 2 519-3680 bp Feature: gene Location: 3777-4094 bp Feature: gene Location: 4192-5034 bp Ori: EXZ58807.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4312-4591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4312 -4591 bp Feature: gene Location: 6027-6341 bp Ori: EXZ58808.1 Feature: domain Description: Avd_like Location: 6033-6300 bp Feature: domain Description: Avd_like Location: 6033-6300 bp Feature: gene Location: 6416-6898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbdN (COG3969), RVT-DGRs, Avd_like (cd16376)

Seq: JGDP01000061.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.60, whole genome shotgun sequence (267255 bp)
Overview 1 RT 1: 73227-82186 bp Neighborhood of RT #1 [73227, 82194] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 73227-75416 bp Ori: EXZ59264.1 Feature: domain Description: GlnA3 Location: 73302-75414 bp Feature: domain Description: GlnA3 Location: 73 3 02-75414 bp Feature: gene Location: 75719-77875 bp Feature: gene Location: 78082-79194 bp Ori: EXZ59266.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78397-78946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 783 97-78946 bp Feature: gene Location: 79336-81129 bp Ori: EXZ59267.1 Feature: domain Description: rpsA Location: 79414-81022 bp Feature: domain Description: rpsA Location: 79414-81022 bp Feature: gene Location: 81280-82194 bp Ori: EXZ59268.1 Gene: rnz Feature: domain Description: RNase_Z Location: 81295-82186 bp Feature: domain Description: RNase_Z Location: 81295-82186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDP01000093.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.92, whole genome shotgun sequence (65501 bp)
Overview 1 RT 1: 61349-65016 bp Neighborhood of RT #1 [61349, 65399] TraX TraG_VirD4 VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 61349-62026 bp Ori: EXZ57842.1 Feature: domain Description: TraX Location: 61379-62015 bp Feature: domain Description: TraX Location: 61379-62015 bp Feature: gene Location: 62044-63747 bp Ori: EXZ57843.1 Feature: domain Description: TraG_VirD4 Location: 62269-62629 bp Feature: domain Description: TraG_VirD4 Location: 62269-62629 bp Feature: domain Description: VirD4 Location: 62800-63325 bp Feature: domain Description: VirD4 Location: 62800-63325 bp Feature: gene Location: 63744-65399 bp Ori: EXZ57844.1 Feature: domain Description: RVT_N Location: 63798-64041 bp Feature: domain Description: RVT_N Location: 63798-64 04 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64086-64731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 086-64 731 bp Feature: domain Description: GIIM Note: maturase Location: 64782-65016 bp Feature: domain Description: GIIM Note: maturase Location: 64 782-65016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), TraG_VirD4, VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDP01000029.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.28, whole genome shotgun sequence (2618 bp)
Overview 1 RT 1: 1-2235 bp Neighborhood of RT #1 [1, 2618] RVT-GII TraG-D_C RVT-GII GIIM Feature: gene Location: 1-377 bp Ori: EXZ60448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265 -376 bp Feature: gene Location: 961-1890 bp Ori: EXZ60449.1 Feature: domain Description: TraG-D_C Location: 1735-1876 bp Feature: domain Description: TraG-D_C Location: 1735 -1876 bp Feature: gene Location: 1887-2618 bp Ori: EXZ60450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-195 0 bp Feature: domain Description: GIIM Note: maturase Location: 2001-2235 bp Feature: domain Description: GIIM Note: maturase Location: 2001-2235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG-D_C (pfam12696), GIIM (pfam08388)

Seq: JGDP01000051.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.50, whole genome shotgun sequence (40439 bp)
Overview 1 RT 1: 1-1560 bp Neighborhood of RT #1 [1, 1682] RVT-GII VirD4 Arm-DNA-bind_5 Feature: gene Location: 1-377 bp Ori: EXZ59964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 5-376 bp Feature: gene Location: 961-1284 bp Ori: EXZ59965.1 Feature: domain Description: VirD4 Location: 973-1267 bp Feature: domain Description: VirD4 Location: 973-126 7 bp Feature: gene Location: 1350-1682 bp Ori: EXZ59966.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1359-1560 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1359-156 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirD4 (COG3505), Arm-DNA-bind_5 (pfam17293)

Seq: JGDP01000021.1 Bacteroides fragilis str. 3719 A10 gbf3719A10.contig.20, whole genome shotgun sequence (2525 bp)
Overview 1 RT 1: 116-1904 bp Neighborhood of RT #1 [116, 1927] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 116-1927 bp Ori: EXZ60495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: domain Description: Intron_maturas2 Location: 1364-1583 bp Feature: domain Description: Intron_maturas2 Location: 1364-1583 bp Feature: domain Description: HNHc Note: nucleases Location: 1748-1904 bp Feature: domain Description: HNHc Note: nucleases Location: 17 48-1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)