myRT

myRT report for GCA_000598925.1_ASM59892v1

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Seq: JGEG01000095.1 Bacteroides fragilis str. 3397 N3 gbf3397N3.contig.94, whole genome shotgun sequence (116865 bp)
Overview 1 RT 1: 23558-28064 bp Neighborhood of RT #1 [23558, 28064] NHL 7WD40 RVT_N RVT-GII Feature: gene Location: 23558-24871 bp Feature: gene Location: 24883-25923 bp Ori: EYA41677.1 Feature: domain Description: NHL Location: 25090-25456 bp Feature: domain Description: NHL Location: 25090-25456 bp Feature: domain Description: 7WD40 Location: 25507-25888 bp Feature: domain Description: 7WD40 Location: 25507-25888 bp Feature: gene Location: 26773-27123 bp Ori: EYA41678.1 Feature: domain Description: RVT_N Location: 26776-26974 bp Feature: domain Description: RVT_N Location: 26776-26974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27028-27097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27028-27097 bp Feature: gene Location: 27784-27918 bp Feature: gene Location: 27927-28064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII

Seq: JGEG01000072.1 Bacteroides fragilis str. 3397 N3 gbf3397N3.contig.71, whole genome shotgun sequence (622654 bp)
Overview 1 RT 1: 495690-499296 bp Neighborhood of RT #1 [495690, 499337] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 495690-496100 bp Ori: EYA43898.1 Feature: domain Description: Cas_Cmr5 Location: 495738-495969 bp Feature: domain Description: Cas_Cmr5 Location: 495738-495969 bp Feature: gene Location: 496103-497047 bp Ori: EYA43899.1 Feature: domain Description: Cmr6_III-B Location: 496259-497036 bp Feature: domain Description: Cmr6_III-B Location: 4962 59-497036 bp Feature: gene Location: 497067-499337 bp Ori: EYA43900.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 497274-497880 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4972 74-497880 bp Feature: domain Description: Cas1_I-II-III Location: 498339-499296 bp Feature: domain Description: Cas1_I-II-III Location: 498339-4992 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGEG01000058.1 Bacteroides fragilis str. 3397 N3 gbf3397N3.contig.57, whole genome shotgun sequence (112991 bp)
Overview 1 RT 1: 87190-93919 bp Neighborhood of RT #1 [87190, 93927] RVT-Retrons rpsA RNase_Z Feature: gene Location: 87190-87330 bp Feature: gene Location: 87453-89609 bp Feature: gene Location: 89816-90928 bp Ori: EYA44853.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90131-90680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9013 1-90680 bp Feature: gene Location: 91070-92863 bp Ori: EYA44854.1 Feature: domain Description: rpsA Location: 91148-92756 bp Feature: domain Description: rpsA Location: 91148-92756 bp Feature: gene Location: 93013-93927 bp Ori: EYA44855.1 Gene: rnz Feature: domain Description: RNase_Z Location: 93028-93919 bp Feature: domain Description: RNase_Z Location: 93 028-93 919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)