myRT

myRT report for GCA_000598945.1_ASM59894v1

Download annotations/find similar RTs

Seq: JGEI01000028.1 Bacteroides fragilis str. 3986 N(B)22 gbf3986NB22.contig.27, whole genome shotgun sequence (97407 bp)
Overview 1 RT 1: 43970-47907 bp Neighborhood of RT #1 [43970, 47907] RVT-DGRs Feature: gene Location: 43970-44338 bp Feature: gene Location: 44347-44775 bp Feature: gene Location: 44738-45925 bp Ori: EYA50544.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45071-45698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45071 -45698 bp Feature: gene Location: 46258-47619 bp Feature: gene Location: 47629-47907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEI01000014.1 Bacteroides fragilis str. 3986 N(B)22 gbf3986NB22.contig.13, whole genome shotgun sequence (798787 bp)
Overview 1 RT 1: 650508-656339 bp Neighborhood of RT #1 [650508, 656339] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 Feature: gene Location: 650508-650918 bp Ori: EYA53119.1 Feature: domain Description: Cas_Cmr5 Location: 650556-650802 bp Feature: domain Description: Cas_Cmr5 Location: 650556-650802 bp Feature: gene Location: 650921-651865 bp Ori: EYA53120.1 Feature: domain Description: Cmr6_III-B Location: 651077-651854 bp Feature: domain Description: Cmr6_III-B Location: 651077-651854 bp Feature: gene Location: 651885-654155 bp Ori: EYA53121.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 652092-652698 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 652 092 -652 698 bp Feature: domain Description: Cas1_I-II-III Location: 653157-654114 bp Feature: domain Description: Cas1_I-II-III Location: 653157-654114 bp Feature: gene Location: 655908-656126 bp Ori: EYA53122.1 Feature: domain Description: DUF772 Location: 655950-656118 bp Feature: domain Description: DUF772 Location: 655950-656118 bp Feature: gene Location: 656184-656339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598)

Seq: JGEI01000011.1 Bacteroides fragilis str. 3986 N(B)22 gbf3986NB22.contig.10, whole genome shotgun sequence (275249 bp)
Overview 1 RT 1: 103997-110726 bp 2 RT 2: 246980-249701 bp Neighborhood of RT #1 [103997, 110734] RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [246980, 249769] RVT-Retrons Virulence_RhuM Feature: gene Location: 103997-104137 bp Feature: gene Location: 104260-106416 bp Feature: gene Location: 106623-107735 bp Ori: EYA53637.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106938-107487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10693 8-107487 bp Feature: gene Location: 107877-109670 bp Ori: EYA53638.1 Feature: domain Description: rpsA Location: 107955-109563 bp Feature: domain Description: rpsA Location: 107955-109563 bp Feature: gene Location: 109922-110734 bp Ori: EYA53639.1 Gene: rnz Feature: domain Description: RNase_Z Location: 109925-110726 bp Feature: domain Description: RNase_Z Location: 109925-110726 bp Feature: gene Location: 246980-247114 bp Feature: gene Location: 247263-247478 bp Feature: gene Location: 247504-248361 bp Ori: EYA53757.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-248191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-248191 bp Feature: gene Location: 248392-249273 bp Feature: gene Location: 249539-249769 bp Ori: EYA53759.1 Feature: domain Description: Virulence_RhuM Location: 249596-249701 bp Feature: domain Description: Virulence_RhuM Location: 249596-249701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), Virulence_RhuM (pfam13310)