myRT

myRT report for GCA_000598965.1_ASM59896v1

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Seq: JGEJ01000027.1 Bacteroides fragilis str. 3986 T(B)13 gbf3986TB13.contig.26, whole genome shotgun sequence (254119 bp)
Overview 1 RT 1: 92741-96390 bp Neighborhood of RT #1 [92741, 96390] RVT-DGRs Feature: gene Location: 92741-93121 bp Feature: gene Location: 93118-93546 bp Feature: gene Location: 93509-94696 bp Ori: EYA54940.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93842-94469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93842-94469 bp Feature: gene Location: 94818-94955 bp Feature: gene Location: 95029-96390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEJ01000010.1 Bacteroides fragilis str. 3986 T(B)13 gbf3986TB13.contig.9, whole genome shotgun sequence (182111 bp)
Overview 1 RT 1: 33736-39567 bp Neighborhood of RT #1 [33736, 39567] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 Feature: gene Location: 33736-34146 bp Ori: EYA56805.1 Feature: domain Description: Cas_Cmr5 Location: 33784-34030 bp Feature: domain Description: Cas_Cmr5 Location: 33784-34030 bp Feature: gene Location: 34149-35093 bp Ori: EYA56806.1 Feature: domain Description: Cmr6_III-B Location: 34305-35082 bp Feature: domain Description: Cmr6_III-B Location: 34305-35082 bp Feature: gene Location: 35113-37383 bp Ori: EYA56807.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35320-35926 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3532 0-3592 6 bp Feature: domain Description: Cas1_I-II-III Location: 36385-37342 bp Feature: domain Description: Cas1_I-II-III Location: 36385-37342 bp Feature: gene Location: 39136-39354 bp Ori: EYA56808.1 Feature: domain Description: DUF772 Location: 39178-39346 bp Feature: domain Description: DUF772 Location: 39178-39346 bp Feature: gene Location: 39424-39567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598)

Seq: JGEJ01000007.1 Bacteroides fragilis str. 3986 T(B)13 gbf3986TB13.contig.6, whole genome shotgun sequence (275249 bp)
Overview 1 RT 1: 101768-110726 bp 2 RT 2: 246980-249836 bp Neighborhood of RT #1 [101768, 110734] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [246980, 249904] RVT-Retrons COG3943 Feature: gene Location: 101768-103957 bp Ori: EYA58079.1 Feature: domain Description: GlnA3 Location: 101843-103955 bp Feature: domain Description: GlnA3 Location: 101843 -103 955 bp Feature: gene Location: 104260-106416 bp Feature: gene Location: 106623-107735 bp Ori: EYA58081.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106938-107487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10693 8-107487 bp Feature: gene Location: 107877-109670 bp Ori: EYA58082.1 Feature: domain Description: rpsA Location: 107955-109563 bp Feature: domain Description: rpsA Location: 107955-109563 bp Feature: gene Location: 109820-110734 bp Ori: EYA58083.1 Gene: rnz Feature: domain Description: RNase_Z Location: 109835-110726 bp Feature: domain Description: RNase_Z Location: 10983 5-110726 bp Feature: gene Location: 246980-247114 bp Feature: gene Location: 247335-247478 bp Feature: gene Location: 247504-248361 bp Ori: EYA58201.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-248191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247666-248191 bp Feature: gene Location: 248392-249273 bp Feature: gene Location: 249539-249904 bp Ori: EYA58203.1 Feature: domain Description: COG3943 Location: 249578-249836 bp Feature: domain Description: COG3 943 Location: 249578-24983 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), COG3943 (Uncharacterized conserved protein )