myRT

myRT report for GCA_000599025.1_ASM59902v1

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Seq: JGEQ01000022.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.21, whole genome shotgun sequence (31212 bp)
Overview 1 RT 1: 18729-25690 bp Neighborhood of RT #1 [18729, 27828] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 18729-19976 bp Ori: EYA93544.1 Feature: domain Description: Relaxase Location: 18921-19281 bp Feature: domain Description: Relaxase Location: 1 8921 -1 9281 bp Feature: gene Location: 20007-20933 bp Ori: EYA93545.1 Feature: domain Description: YWFCY Location: 20016-20193 bp Feature: domain Description: YWFCY Location: 2001 6-201 93 bp Feature: gene Location: 21571-23223 bp Ori: EYA93546.1 Feature: domain Description: RVT_N Location: 21625-21868 bp Feature: domain Description: RVT_N Location: 21 625-21 868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21913-22561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 91 3-22561 bp Feature: domain Description: GIIM Note: maturase Location: 22615-22846 bp Feature: domain Description: GIIM Note: maturase Location: 2261 5-22846 bp Feature: gene Location: 23345-24442 bp Ori: EYA93547.1 Feature: domain Description: TraG-D_C Location: 23810-24140 bp Feature: domain Description: TraG-D_C Location: 2381 0-241 40 bp Feature: gene Location: 24574-27828 bp Ori: EYA93548.1 Feature: domain Description: KAP_NTPase Location: 24712-25690 bp Feature: domain Description: KAP_NTPase Location: 2471 2-25690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)

Seq: JGEQ01000060.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.59, whole genome shotgun sequence (137915 bp)
Overview 1 RT 1: 39817-45679 bp Neighborhood of RT #1 [39817, 46149] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 39817-41220 bp Feature: gene Location: 41431-42327 bp Ori: EYA92053.1 Feature: domain Description: Toprim_2 Location: 41950-42238 bp Feature: domain Description: Toprim_2 Location: 41950-42 2 38 bp Feature: gene Location: 42332-44140 bp Ori: EYA92176.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42596-43418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 596-43418 bp Feature: domain Description: Intron_maturas2 Location: 43487-43796 bp Feature: domain Description: Intron_maturas2 Location: 43487-43796 bp Feature: gene Location: 44688-44870 bp Feature: gene Location: 45082-46149 bp Ori: EYA92086.1 Feature: domain Description: AAA_25 Location: 45217-45679 bp Feature: domain Description: AAA_2 5 Location: 452 17-45679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: JGEQ01000059.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.58, whole genome shotgun sequence (179674 bp)
Overview 1 RT 1: 103539-112497 bp Neighborhood of RT #1 [103539, 112505] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103539-105728 bp Ori: EYA92243.1 Feature: domain Description: GlnA3 Location: 103614-105726 bp Feature: domain Description: GlnA3 Location: 103 614-105726 bp Feature: gene Location: 106031-108187 bp Feature: gene Location: 108394-109506 bp Ori: EYA92206.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108709-109258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108709-109258 bp Feature: gene Location: 109648-111441 bp Ori: EYA92325.1 Feature: domain Description: rpsA Location: 109726-111334 bp Feature: domain Description: rpsA Location: 109726-1113 3 4 bp Feature: gene Location: 111591-112505 bp Ori: EYA92198.1 Gene: rnz Feature: domain Description: RNase_Z Location: 111606-112497 bp Feature: domain Description: RNase_Z Location: 111606-112497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGEQ01000073.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.72, whole genome shotgun sequence (63062 bp)
Overview 1 RT 1: 45010-47848 bp Neighborhood of RT #1 [45010, 47848] RVT-DGRs Feature: gene Location: 45010-45195 bp Feature: gene Location: 45456-45941 bp Feature: gene Location: 45938-47239 bp Ori: EYA90690.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46151-46748 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 6151-4 674 8 bp Feature: gene Location: 47435-47548 bp Feature: gene Location: 47615-47848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEQ01000074.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.73, whole genome shotgun sequence (97933 bp)
Overview 1 RT 1: 6288-9894 bp Neighborhood of RT #1 [6288, 9935] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 6288-6698 bp Ori: EYA90640.1 Feature: domain Description: Cas_Cmr5 Location: 6336-6582 bp Feature: domain Description: Cas_Cmr5 Location: 6336-65 82 bp Feature: gene Location: 6701-7645 bp Ori: EYA90580.1 Feature: domain Description: Cmr6_III-B Location: 6857-7634 bp Feature: domain Description: Cmr6_III-B Location: 685 7-7634 bp Feature: gene Location: 7665-9935 bp Ori: EYA90590.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7872-8478 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7872-8478 bp Feature: domain Description: Cas1_I-II-III Location: 8937-9894 bp Feature: domain Description: Cas1_I-II-III Location: 8937-9894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGEQ01000068.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.67, whole genome shotgun sequence (77013 bp)
Overview 1 RT 1: 1-2528 bp Neighborhood of RT #1 [1, 2528] RVT-DGRs Feature: gene Location: 1-121 bp Feature: gene Location: 317-1618 bp Ori: EYA91226.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 530-1127 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 530-1127 bp Feature: gene Location: 1615-2100 bp Feature: gene Location: 2286-2528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEQ01000036.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.35, whole genome shotgun sequence (37182 bp)
Overview 1 RT 1: 32578-37046 bp Neighborhood of RT #1 [32578, 37182] Relaxase YWFCY SXT_TraD VirD4 RVT-GII Feature: gene Location: 32578-33801 bp Ori: EYA93463.1 Feature: domain Description: Relaxase Location: 32677-33337 bp Feature: domain Description: Relaxase Location: 3267 7 -33337 bp Feature: gene Location: 33838-35376 bp Ori: EYA93464.1 Feature: domain Description: YWFCY Location: 33844-34021 bp Feature: domain Description: YWFCY Location: 33844-34021 bp Feature: domain Description: SXT_TraD Location: 34444-34681 bp Feature: domain Description: SXT_TraD Location: 34444-34681 bp Feature: domain Description: VirD4 Location: 35056-35359 bp Feature: domain Description: VirD4 Location: 35056-35359 bp Feature: gene Location: 35960-37182 bp Ori: EYA93465.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36224-37046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36224-37 046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), SXT_TraD (TIGR03743), VirD4 (COG3505), RVT-GII

Seq: JGEQ01000062.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.61, whole genome shotgun sequence (278059 bp)
Overview 1 RT 1: 49323-55685 bp Neighborhood of RT #1 [49323, 55699] Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 49323-52034 bp Ori: EYA91952.1 Feature: domain Description: Bac_Flav_CT_G Location: 49470-50973 bp Feature: domain Description: Bac_Flav_CT_G Location: 49470-50973 bp Feature: domain Description: Bac_Flav_CT_G Location: 50988-51924 bp Feature: domain Description: Bac_Flav_CT_G Location: 5098 8 -51924 bp Feature: gene Location: 52145-52438 bp Ori: EYA91834.1 Feature: domain Description: DUF4133 Location: 52184-52364 bp Feature: domain Description: DUF4133 Location: 5218 4-52364 bp Feature: gene Location: 52671-54482 bp Ori: EYA91964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52935-53757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52935-53757 bp Feature: domain Description: Intron_maturas2 Location: 53946-54156 bp Feature: domain Description: Intron_maturas2 Location: 53946-54156 bp Feature: domain Description: HNHc Note: nucleases Location: 54306-54411 bp Feature: domain Description: HNHc Note: nucleases Location: 54306-54411 bp Feature: gene Location: 55024-55293 bp Ori: EYA91887.1 Feature: domain Description: DUF4134 Location: 55078-55276 bp Feature: domain Description: DUF4134 Location: 55078 -55276 bp Feature: gene Location: 55376-55699 bp Ori: EYA91790.1 Feature: domain Description: DUF4134 Location: 55400-55685 bp Feature: domain Description: DUF4134 Location: 55400-5568 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: JGEQ01000064.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.63, whole genome shotgun sequence (193905 bp)
Overview 1 RT 1: 111698-114617 bp Neighborhood of RT #1 [111698, 114617] RVT-DGRs Feature: gene Location: 111698-112231 bp Feature: gene Location: 112247-112627 bp Feature: gene Location: 112832-113818 bp Ori: EYA91468.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 113042-113627 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 113042-113627 bp Feature: gene Location: 113802-114119 bp Feature: gene Location: 114132-114617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEQ01000101.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.100, whole genome shotgun sequence (140303 bp)
Overview 1 RT 1: 63510-67159 bp Neighborhood of RT #1 [63510, 67159] RVT-DGRs Feature: gene Location: 63510-63890 bp Feature: gene Location: 63887-64300 bp Feature: gene Location: 64278-65465 bp Ori: EYA88453.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64611-65238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64611-65238 bp Feature: gene Location: 65587-65724 bp Feature: gene Location: 65798-67159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGEQ01000058.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.57, whole genome shotgun sequence (388901 bp)
Overview 1 RT 1: 209494-214110 bp Neighborhood of RT #1 [209494, 214181] RVT-DGRs Dam Feature: gene Location: 209494-210897 bp Feature: gene Location: 211364-211504 bp Feature: gene Location: 211505-212728 bp Ori: EYA92396.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211595-212186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211 595-212186 bp Feature: gene Location: 212742-213152 bp Feature: gene Location: 213339-214181 bp Ori: EYA92433.1 Feature: domain Description: Dam Location: 213342-214110 bp Feature: domain Description: Dam Location: 213342-21411 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: JGEQ01000086.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.85, whole genome shotgun sequence (268329 bp)
Overview 1 RT 1: 459-3585 bp Neighborhood of RT #1 [459, 3611] RVT-GII Intron_maturas2 HNHc RibD_C Feature: gene Location: 459-2270 bp Ori: EYA89679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1545 bp Feature: domain Description: Intron_maturas2 Location: 1707-1926 bp Feature: domain Description: Intron_maturas2 Location: 1707-1926 bp Feature: domain Description: HNHc Note: nucleases Location: 2091-2247 bp Feature: domain Description: HNHc Note: nucleases Location: 2091-2247 bp Feature: gene Location: 2284-2895 bp Feature: gene Location: 3216-3611 bp Ori: EYA89445.1 Feature: domain Description: RibD_C Location: 3423-3585 bp Feature: domain Description: RibD_C Location: 3423-3585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RibD_C (pfam01872)

Seq: JGEQ01000067.1 Bacteroides fragilis str. S36L5 gbfS36L5.contig.66, whole genome shotgun sequence (106569 bp)
Overview 1 RT 1: 1-21455 bp Neighborhood of RT #1 [1, 21466] RVT-GII YWFCY TrwB Relaxase Relaxase RVT-GII Intron_maturas2 HNHc ParAB_family DUF3408 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Feature: gene Location: 1-1223 bp Ori: EYA91327.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: gene Location: 1807-3297 bp Ori: EYA91301.1 Feature: domain Description: YWFCY Location: 1810-1942 bp Feature: domain Description: YWFCY Location: 1810-1942 bp Feature: domain Description: TrwB Location: 2899-3283 bp Feature: domain Description: TrwB Location: 2899-3283 bp Feature: gene Location: 3383-4528 bp Ori: EYA91368.1 Feature: domain Description: Relaxase Location: 3569-3884 bp Feature: domain Description: Relaxase Location: 3569-3884 bp Feature: domain Description: Relaxase Location: 4184-4421 bp Feature: domain Description: Relaxase Location: 4184-4421 bp Feature: gene Location: 4522-4851 bp Feature: gene Location: 5335-5577 bp Feature: gene Location: 6348-8159 bp Ori: EYA91389.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6612-7434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6612-7434 bp Feature: domain Description: Intron_maturas2 Location: 7503-7815 bp Feature: domain Description: Intron_maturas2 Location: 7503-7815 bp Feature: domain Description: HNHc Note: nucleases Location: 7989-8136 bp Feature: domain Description: HNHc Note: nucleases Location: 7989-813 6 bp Feature: gene Location: 8146-8922 bp Ori: EYA91390.1 Feature: domain Description: ParAB_family Location: 8278-8752 bp Feature: domain Description: ParAB_family Location: 8278-8752 bp Feature: gene Location: 8929-9351 bp Ori: EYA91278.1 Feature: domain Description: DUF3408 Location: 9016-9331 bp Feature: domain Description: DUF3408 Location: 9016-9331 bp Feature: gene Location: 11341-11586 bp Ori: EYA91332.1 Feature: domain Description: Bac_Flav_CT_G Location: 11344-11569 bp Feature: domain Description: Bac_Flav_CT_G Location: 113 44-11569 bp Feature: gene Location: 12045-12179 bp Feature: gene Location: 12193-13869 bp Ori: EYA91277.1 Feature: domain Description: RVT_N Location: 12247-12490 bp Feature: domain Description: RVT_N Location: 12247-12490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12535-13183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12535-13 183 bp Feature: domain Description: GIIM Note: maturase Location: 13234-13468 bp Feature: domain Description: GIIM Note: maturase Location: 13 234-13 468 bp Feature: gene Location: 13850-14680 bp Ori: EYA91291.1 Feature: domain Description: Bac_Flav_CT_G Location: 13970-14666 bp Feature: domain Description: Bac_Flav_CT_G Location: 13 970-14666 bp Feature: gene Location: 14868-15008 bp Feature: gene Location: 15264-16925 bp Ori: EYA91351.1 Feature: domain Description: RVT_N Location: 15318-15561 bp Feature: domain Description: RVT_N Location: 15318-15561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15606-16254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15606-16254 bp Feature: domain Description: GIIM Note: maturase Location: 16308-16539 bp Feature: domain Description: GIIM Note: maturase Location: 16308-16539 bp Feature: gene Location: 16922-18061 bp Ori: EYA91352.1 Feature: domain Description: Bac_Flav_CT_G Location: 17042-18044 bp Feature: domain Description: Bac_Flav_CT_G Location: 17042-18044 bp Feature: gene Location: 18640-20451 bp Ori: EYA91304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18904-19726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18904-19726 bp Feature: domain Description: Intron_maturas2 Location: 19795-20128 bp Feature: domain Description: Intron_maturas2 Location: 19795-20128 bp Feature: domain Description: HNHc Note: nucleases Location: 20272-20422 bp Feature: domain Description: HNHc Note: nucleases Location: 20272-20422 bp Feature: gene Location: 20532-21137 bp Ori: EYA91330.1 Feature: domain Description: Bac_Flav_CT_G Location: 20562-21129 bp Feature: domain Description: Bac_Flav_CT_G Location: 20562-21129 bp Feature: gene Location: 21152-21466 bp Ori: EYA91296.1 Feature: domain Description: DUF3876 Location: 21206-21455 bp Feature: domain Description: DUF3876 Location: 21206-21455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YWFCY (pfam14293), TrwB, Relaxase (pfam03432), Intron_maturas2 (pfam01348), HNHc (smart00507), ParAB_family (cd02042), DUF3408 (pfam11888), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655)
GIIM (pfam08388), DUF3876 (pfam12992)