myRT

myRT report for GCA_000599085.1_ASM59908v1

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Seq: JGDF01000150.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.150, whole genome shotgun sequence (92606 bp)
Overview 1 RT 1: 27731-32237 bp Neighborhood of RT #1 [27731, 32237] NHL 7WD40 RVT_N RVT-GII Feature: gene Location: 27731-29044 bp Feature: gene Location: 29041-30096 bp Ori: EXZ08101.1 Feature: domain Description: NHL Location: 29263-29629 bp Feature: domain Description: NHL Location: 29263-29629 bp Feature: domain Description: 7WD40 Location: 29680-30061 bp Feature: domain Description: 7WD40 Location: 29680-30061 bp Feature: gene Location: 31051-31296 bp Ori: EXZ08102.1 Feature: domain Description: RVT_N Location: 31054-31147 bp Feature: domain Description: RVT_N Location: 31 054-31 1 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31201-31270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 201 -31 270 bp Feature: gene Location: 31957-32091 bp Feature: gene Location: 32100-32237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII

Seq: JGDF01000235.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.237, whole genome shotgun sequence (7570 bp)
Overview 1 RT 1: 3849-7455 bp Neighborhood of RT #1 [3849, 7496] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 3849-4259 bp Ori: EXZ07688.1 Feature: domain Description: Cas_Cmr5 Location: 3897-4143 bp Feature: domain Description: Cas_Cmr5 Location: 3897-4143 bp Feature: gene Location: 4262-5206 bp Ori: EXZ07689.1 Feature: domain Description: Cmr6_III-B Location: 4418-5195 bp Feature: domain Description: Cmr6_III-B Location: 4418-5195 bp Feature: gene Location: 5226-7496 bp Ori: EXZ07690.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5433-6039 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5433-6039 bp Feature: domain Description: Cas1_I-II-III Location: 6498-7455 bp Feature: domain Description: Cas1_I-II-III Location: 6498-7455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGDF01000036.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.36, whole genome shotgun sequence (140212 bp)
Overview 1 RT 1: 71478-80436 bp Neighborhood of RT #1 [71478, 80444] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 71478-73667 bp Ori: EXZ11095.1 Feature: domain Description: GlnA3 Location: 71553-73665 bp Feature: domain Description: GlnA3 Location: 71553 -73 665 bp Feature: gene Location: 73970-76126 bp Feature: gene Location: 76333-77445 bp Ori: EXZ11097.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76648-77197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76648-77197 bp Feature: gene Location: 77587-79380 bp Ori: EXZ11098.1 Feature: domain Description: rpsA Location: 77665-79273 bp Feature: domain Description: rpsA Location: 77665-79273 bp Feature: gene Location: 79530-80444 bp Ori: EXZ11099.1 Gene: rnz Feature: domain Description: RNase_Z Location: 79545-80436 bp Feature: domain Description: RNase_Z Location: 79545-8043 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)