myRT

myRT report for GCA_000599105.1_ASM59910v1

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Seq: JGDI01000113.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.113, whole genome shotgun sequence (78195 bp)
Overview 1 RT 1: 11244-20202 bp Neighborhood of RT #1 [11244, 20210] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 11244-13433 bp Feature: domain Description: GlnA3 Location: 11319-13431 bp Feature: domain Description: GlnA3 Location: 1 1 31 9-1 3431 bp Feature: gene Location: 13736-15892 bp Feature: gene Location: 16099-17211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16414-16963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 641 4-1 6963 bp Feature: gene Location: 17353-19146 bp Feature: domain Description: rpsA Location: 17431-19039 bp Feature: domain Description: rpsA Location: 1 7431 -1 9039 bp Feature: gene Location: 19296-20210 bp Feature: domain Description: RNase_Z Location: 19311-20202 bp Feature: domain Description: RNase_Z Location: 1 931 1 -20202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDI01000540.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.553, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 1-2505 bp Neighborhood of RT #1 [1, 2505] RVT-GII Feature: gene Location: 1-1108 bp Feature: gene Location: 1221-1337 bp Feature: gene Location: 2103-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2268-2505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 68-2 505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JGDI01000529.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.542, whole genome shotgun sequence (1013 bp)
Overview 1 RT 1: 1-649 bp Neighborhood of RT #1 [1, 1013] RVT-CRISPR-like Feature: gene Location: 1-1013 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 43-649 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 43 -649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JGDI01000078.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.78, whole genome shotgun sequence (11767 bp)
Overview 1 RT 1: 22-2749 bp Neighborhood of RT #1 [22, 2763] RVT-GII GIIM birA_ligase MmcQ Feature: gene Location: 22-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-523 bp Feature: domain Description: GIIM Note: maturase Location: 577-808 bp Feature: domain Description: GIIM Note: maturase Location: 577-808 bp Feature: gene Location: 1752-2504 bp Feature: domain Description: birA_ligase Location: 1788-2475 bp Feature: domain Description: birA_ligase Location: 1788-24 75 bp Feature: gene Location: 2491-2763 bp Feature: domain Description: MmcQ Location: 2494-2749 bp Feature: domain Description: MmcQ Location: 24 94 -274 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT birA_ligase (TIGR00121), RVT-GII, GIIM (pfam08388), MmcQ (COG2315)

Seq: JGDI01000735.1 Bacteroides fragilis str. S13 L11 gbfS13L11.contig.752, whole genome shotgun sequence (9531 bp)
Overview 1 RT 1: 1-4410 bp Neighborhood of RT #1 [1, 4622] RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 1-117 bp Feature: gene Location: 122-1774 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 2412-3335 bp Feature: domain Description: YWFCY Location: 2418-2595 bp Feature: domain Description: YWFCY Location: 2418-25 95 bp Feature: gene Location: 3372-4622 bp Feature: domain Description: Relaxase Location: 3546-3852 bp Feature: domain Description: Relaxase Location: 35 46-385 2 bp Feature: domain Description: Relaxase Location: 4113-4410 bp Feature: domain Description: Relaxase Location: 4113-4410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)