myRT

myRT report for GCA_000599125.1_ASM59912v1

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Seq: JGDJ01000060.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.60, whole genome shotgun sequence (11509 bp)
Overview 1 RT 1: 1-1459 bp Neighborhood of RT #1 [1, 1459] RVT-DGRs Feature: gene Location: 1-382 bp Ori: EXZ31236.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211-379 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 1 -379 bp Feature: gene Location: 587-967 bp Feature: gene Location: 983-1459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDJ01000069.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.69, whole genome shotgun sequence (6812 bp)
Overview 1 RT 1: 1-4533 bp Neighborhood of RT #1 [1, 5228] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 1-612 bp Ori: EXZ31144.1 Feature: domain Description: TraG-D_C Location: 466-607 bp Feature: domain Description: TraG-D_C Location: 466-607 bp Feature: gene Location: 734-2386 bp Ori: EXZ31141.1 Feature: domain Description: RVT_N Location: 788-1031 bp Feature: domain Description: RVT_N Location: 788-1031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-172 4 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2 009 bp Feature: gene Location: 3024-3950 bp Ori: EXZ31140.1 Feature: domain Description: YWFCY Location: 3033-3210 bp Feature: domain Description: YWFCY Location: 3033-32 10 bp Feature: gene Location: 3981-5228 bp Ori: EXZ31145.1 Feature: domain Description: Relaxase Location: 4173-4533 bp Feature: domain Description: Relaxase Location: 4173-4533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: JGDJ01000032.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.31, whole genome shotgun sequence (2522 bp)
Overview 1 RT 1: 1-1904 bp Neighborhood of RT #1 [1, 1927] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-129 bp Feature: gene Location: 116-1927 bp Ori: EXZ31372.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 80-1202 bp Feature: domain Description: Intron_maturas2 Location: 1364-1583 bp Feature: domain Description: Intron_maturas2 Location: 13 64-1583 bp Feature: domain Description: HNHc Note: nucleases Location: 1748-1904 bp Feature: domain Description: HNHc Note: nucleases Location: 1748-1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDJ01000002.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.1, whole genome shotgun sequence (18381 bp)
Overview 1 RT 1: 712-3550 bp Neighborhood of RT #1 [712, 3550] RVT-DGRs Feature: gene Location: 712-945 bp Feature: gene Location: 1012-1125 bp Feature: gene Location: 1321-2622 bp Ori: EXZ31516.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1534-2131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1534 -2131 bp Feature: gene Location: 2619-3104 bp Feature: gene Location: 3386-3550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDJ01000042.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.41, whole genome shotgun sequence (1215 bp)
Overview 1 RT 1: 1-1204 bp Neighborhood of RT #1 [1, 1215] RVT-CRISPR Cmr6_III-B Feature: gene Location: 1-1004 bp Ori: EXZ31292.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208-814 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208-814 bp Feature: gene Location: 1024-1215 bp Ori: EXZ31291.1 Feature: domain Description: Cmr6_III-B Location: 1093-1204 bp Feature: domain Description: Cmr6_III-B Location: 1093-1204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cmr6_III-B (cd09661)

Seq: JGDJ01000147.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.147, whole genome shotgun sequence (137889 bp)
Overview 1 RT 1: 2292-6941 bp Neighborhood of RT #1 [2292, 7012] RVT-DGRs Dam Feature: gene Location: 2292-3728 bp Feature: gene Location: 4195-4335 bp Feature: gene Location: 4336-5559 bp Ori: EXZ29944.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4426-5017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4426 -5017 bp Feature: gene Location: 5573-5983 bp Feature: gene Location: 6170-7012 bp Ori: EXZ29946.1 Feature: domain Description: Dam Location: 6173-6941 bp Feature: domain Description: Dam Location: 6 173-6 941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: JGDJ01000159.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.159, whole genome shotgun sequence (55843 bp)
Overview 1 RT 1: 24535-28075 bp Neighborhood of RT #1 [24535, 28089] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 24535-24828 bp Ori: EXZ29508.1 Feature: domain Description: DUF4133 Location: 24574-24754 bp Feature: domain Description: DUF4133 Location: 2457 4-247 54 bp Feature: gene Location: 24842-24964 bp Ori: EXZ29509.1 Feature: domain Description: DUF4134 Location: 24860-24950 bp Feature: domain Description: DUF4134 Location: 24860-24950 bp Feature: gene Location: 25061-26872 bp Ori: EXZ29510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25325-26147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25325-26147 bp Feature: domain Description: Intron_maturas2 Location: 26336-26546 bp Feature: domain Description: Intron_maturas2 Location: 26336-26546 bp Feature: domain Description: HNHc Note: nucleases Location: 26696-26801 bp Feature: domain Description: HNHc Note: nucleases Location: 26696-26801 bp Feature: gene Location: 27414-27656 bp Ori: EXZ29511.1 Feature: domain Description: DUF4134 Location: 27441-27639 bp Feature: domain Description: DUF4134 Location: 27 441-27 639 bp Feature: gene Location: 27766-28089 bp Ori: EXZ29512.1 Feature: domain Description: DUF4134 Location: 27790-28075 bp Feature: domain Description: DUF4134 Location: 27 7 90-2807 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDJ01000153.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.153, whole genome shotgun sequence (64388 bp)
Overview 1 RT 1: 21879-27741 bp Neighborhood of RT #1 [21879, 28211] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 21879-23282 bp Feature: gene Location: 23493-24389 bp Ori: EXZ29720.1 Feature: domain Description: Toprim_2 Location: 24012-24300 bp Feature: domain Description: Toprim_2 Location: 24012-24300 bp Feature: gene Location: 24394-26202 bp Ori: EXZ29721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24658-25480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24658 -2548 0 bp Feature: domain Description: Intron_maturas2 Location: 25549-25858 bp Feature: domain Description: Intron_maturas2 Location: 25549-258 58 bp Feature: gene Location: 26750-26932 bp Feature: gene Location: 27144-28211 bp Ori: EXZ29723.1 Feature: domain Description: AAA_25 Location: 27279-27741 bp Feature: domain Description: AAA_25 Location: 27279-27741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: JGDJ01000151.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.151, whole genome shotgun sequence (146838 bp)
Overview 1 RT 1: 71209-80167 bp Neighborhood of RT #1 [71209, 80175] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 71209-73398 bp Ori: EXZ29825.1 Feature: domain Description: GlnA3 Location: 71284-73396 bp Feature: domain Description: GlnA3 Location: 71284-7339 6 bp Feature: gene Location: 73701-75857 bp Feature: gene Location: 76064-77176 bp Ori: EXZ29827.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76379-76928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76379 -769 28 bp Feature: gene Location: 77318-79111 bp Ori: EXZ29828.1 Feature: domain Description: rpsA Location: 77396-79004 bp Feature: domain Description: rpsA Location: 7739 6-79 004 bp Feature: gene Location: 79261-80175 bp Ori: EXZ29829.1 Gene: rnz Feature: domain Description: RNase_Z Location: 79276-80167 bp Feature: domain Description: RNase_Z Location: 79 276-80167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDJ01000099.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.99, whole genome shotgun sequence (850 bp)
Overview 1 RT 1: 1-638 bp Neighborhood of RT #1 [1, 829] RVT-DGRs Feature: gene Location: 1-267 bp Feature: gene Location: 251-829 bp Ori: EXZ31034.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 254-638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 254-638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDJ01000287.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.288, whole genome shotgun sequence (37399 bp)
Overview 1 RT 1: 31599-35248 bp Neighborhood of RT #1 [31599, 35248] RVT-DGRs Feature: gene Location: 31599-31979 bp Feature: gene Location: 31976-32404 bp Feature: gene Location: 32367-33554 bp Ori: EXZ26441.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32700-33327 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32700-33327 bp Feature: gene Location: 33676-33813 bp Feature: gene Location: 33887-35248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDJ01000177.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.177, whole genome shotgun sequence (60285 bp)
Overview 1 RT 1: 3536-20469 bp Neighborhood of RT #1 [3536, 20480] RVT-GII Intron_maturas2 HNHc ParAB_family DUF3408 DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Feature: gene Location: 3536-3958 bp Feature: gene Location: 4349-4591 bp Feature: gene Location: 5362-7173 bp Ori: EXZ29027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5626-6448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5626-6448 bp Feature: domain Description: Intron_maturas2 Location: 6517-6829 bp Feature: domain Description: Intron_maturas2 Location: 6517-6829 bp Feature: domain Description: HNHc Note: nucleases Location: 7003-7150 bp Feature: domain Description: HNHc Note: nucleases Location: 7003-7150 bp Feature: gene Location: 7160-7936 bp Ori: EXZ29028.1 Feature: domain Description: ParAB_family Location: 7292-7766 bp Feature: domain Description: ParAB_family Location: 7292-7766 bp Feature: gene Location: 7943-8365 bp Ori: EXZ29029.1 Feature: domain Description: DUF3408 Location: 8030-8345 bp Feature: domain Description: DUF3408 Location: 8030-8345 bp Feature: gene Location: 10035-10358 bp Ori: EXZ29033.1 Feature: domain Description: DUF4133 Location: 10050-10317 bp Feature: domain Description: DUF4133 Location: 10050-10317 bp Feature: gene Location: 10355-10600 bp Ori: EXZ29034.1 Feature: domain Description: Bac_Flav_CT_G Location: 10358-10583 bp Feature: domain Description: Bac_Flav_CT_G Location: 10358-10583 bp Feature: gene Location: 11207-12883 bp Ori: EXZ29035.1 Feature: domain Description: RVT_N Location: 11261-11504 bp Feature: domain Description: RVT_N Location: 112 61-11504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11549-12197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11549-12 197 bp Feature: domain Description: GIIM Note: maturase Location: 12248-12482 bp Feature: domain Description: GIIM Note: maturase Location: 12 248-12 482 bp Feature: gene Location: 12864-13694 bp Ori: EXZ29036.1 Feature: domain Description: Bac_Flav_CT_G Location: 12984-13680 bp Feature: domain Description: Bac_Flav_CT_G Location: 12 984-13680 bp Feature: gene Location: 13882-14022 bp Feature: gene Location: 14278-15939 bp Ori: EXZ29038.1 Feature: domain Description: RVT_N Location: 14332-14575 bp Feature: domain Description: RVT_N Location: 14332-14575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14620-15268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14620-15268 bp Feature: domain Description: GIIM Note: maturase Location: 15322-15553 bp Feature: domain Description: GIIM Note: maturase Location: 15322-15553 bp Feature: gene Location: 15936-17075 bp Ori: EXZ29039.1 Feature: domain Description: Bac_Flav_CT_G Location: 16056-17058 bp Feature: domain Description: Bac_Flav_CT_G Location: 16056-17058 bp Feature: gene Location: 17654-19465 bp Ori: EXZ29040.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17918-18740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17918-18740 bp Feature: domain Description: Intron_maturas2 Location: 18809-19142 bp Feature: domain Description: Intron_maturas2 Location: 18809-19142 bp Feature: domain Description: HNHc Note: nucleases Location: 19286-19436 bp Feature: domain Description: HNHc Note: nucleases Location: 19286-19436 bp Feature: gene Location: 19612-20151 bp Ori: EXZ29041.1 Feature: domain Description: Bac_Flav_CT_G Location: 19615-20143 bp Feature: domain Description: Bac_Flav_CT_G Location: 19615-20143 bp Feature: gene Location: 20166-20480 bp Ori: EXZ29042.1 Feature: domain Description: DUF3876 Location: 20220-20469 bp Feature: domain Description: DUF3876 Location: 20220-20469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ParAB_family (cd02042), DUF3408 (pfam11888), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: JGDJ01000179.1 Bacteroides fragilis str. S36L11 gbfS36L11.contig.179, whole genome shotgun sequence (39667 bp)
Overview 1 RT 1: 23-2234 bp Neighborhood of RT #1 [23, 2234] RVT-DGRs Feature: gene Location: 23-1324 bp Ori: EXZ28924.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 236-833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 236-833 bp Feature: gene Location: 1321-1806 bp Feature: gene Location: 1992-2234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs