myRT

myRT report for GCA_000599165.2_ASM59916v2

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Seq: JGDO01000017.1 Bacteroides fragilis str. 3397 T14 gbf3397T14.contig.16, whole genome shotgun sequence (82970 bp)
Overview 1 RT 1: 54970-63928 bp Neighborhood of RT #1 [54970, 63936] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 54970-57159 bp Ori: EXZ54951.1 Feature: domain Description: GlnA3 Location: 55045-57157 bp Feature: domain Description: GlnA3 Location: 55045-571 57 bp Feature: gene Location: 57462-59618 bp Feature: gene Location: 59825-60937 bp Ori: EXZ54953.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60140-60689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 601 40-60689 bp Feature: gene Location: 61079-62872 bp Ori: EXZ54954.1 Feature: domain Description: rpsA Location: 61157-62765 bp Feature: domain Description: rpsA Location: 61 1 57-62765 bp Feature: gene Location: 63022-63936 bp Ori: EXZ54955.1 Gene: rnz Feature: domain Description: RNase_Z Location: 63037-63928 bp Feature: domain Description: RNase_Z Location: 63037-63928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDO01000059.1 Bacteroides fragilis str. 3397 T14 gbf3397T14.contig.58, whole genome shotgun sequence (93305 bp)
Overview 1 RT 1: 7684-11333 bp Neighborhood of RT #1 [7684, 11333] RVT-DGRs Feature: gene Location: 7684-8064 bp Feature: gene Location: 8061-8489 bp Feature: gene Location: 8452-9639 bp Ori: EXZ51589.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8785-9412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8785-9412 bp Feature: gene Location: 9761-9898 bp Feature: gene Location: 9972-11333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JGDO01000035.1 Bacteroides fragilis str. 3397 T14 gbf3397T14.contig.34, whole genome shotgun sequence (299664 bp)
Overview 1 RT 1: 172643-176249 bp Neighborhood of RT #1 [172643, 176290] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 172643-173053 bp Ori: EXZ53663.1 Feature: domain Description: Cas_Cmr5 Location: 172691-172922 bp Feature: domain Description: Cas_Cmr5 Location: 172691-172922 bp Feature: gene Location: 173056-174000 bp Ori: EXZ53664.1 Feature: domain Description: Cmr6_III-B Location: 173212-173989 bp Feature: domain Description: Cmr6_III-B Location: 173 212-173 989 bp Feature: gene Location: 174020-176290 bp Ori: EXZ53665.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 174227-174833 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 174227-17483 3 bp Feature: domain Description: Cas1_I-II-III Location: 175292-176249 bp Feature: domain Description: Cas1_I-II-III Location: 175292-176249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)