myRT

myRT report for GCA_000599185.2_ASM59918v2

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Seq: JGDS01000040.1 Bacteroides fragilis str. 3976T8 gbf3976T8.contig.39, whole genome shotgun sequence (132096 bp)
Overview 1 RT 1: 80097-86827 bp Neighborhood of RT #1 [80097, 86835] RVT-Retrons rpsA RNase_Z Feature: gene Location: 80097-80237 bp Feature: gene Location: 80360-82516 bp Feature: gene Location: 82735-83835 bp Ori: EXZ74521.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83038-83587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83038-83587 bp Feature: gene Location: 83977-85770 bp Ori: EXZ74512.1 Feature: domain Description: rpsA Location: 84055-85663 bp Feature: domain Description: rpsA Location: 84055-85663 bp Feature: gene Location: 85921-86835 bp Ori: EXZ74533.1 Gene: rnz Feature: domain Description: RNase_Z Location: 85936-86827 bp Feature: domain Description: RNase_Z Location: 85936-86827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDS01000034.1 Bacteroides fragilis str. 3976T8 gbf3976T8.contig.33, whole genome shotgun sequence (103977 bp)
Overview 1 RT 1: 59761-63270 bp Neighborhood of RT #1 [59761, 63270] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 59761-60066 bp Feature: gene Location: 60111-60389 bp Ori: EXZ74982.1 Feature: domain Description: DUF4134 Location: 60171-60372 bp Feature: domain Description: DUF4134 Location: 60171-60372 bp Feature: gene Location: 60931-62742 bp Ori: EXZ74942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61195-62017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61195-62 017 bp Feature: domain Description: Intron_maturas2 Location: 62206-62416 bp Feature: domain Description: Intron_maturas2 Location: 62 2 06-62 416 bp Feature: domain Description: HNHc Note: nucleases Location: 62566-62671 bp Feature: domain Description: HNHc Note: nucleases Location: 62 566-62 671 bp Feature: gene Location: 62839-62961 bp Ori: EXZ74922.1 Feature: domain Description: DUF4134 Location: 62857-62947 bp Feature: domain Description: DUF4134 Location: 62 857-62 947 bp Feature: gene Location: 63043-63270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JGDS01000041.1 Bacteroides fragilis str. 3976T8 gbf3976T8.contig.40, whole genome shotgun sequence (210415 bp)
Overview 1 RT 1: 133659-139865 bp Neighborhood of RT #1 [133659, 139865] HsdM HTH_XRE RVT-UG8 RVT-UG3 Feature: gene Location: 133659-135155 bp Ori: EXZ74349.1 Feature: domain Description: HsdM Location: 134010-135144 bp Feature: domain Description: HsdM Location: 13 4010-13 5144 bp Feature: gene Location: 135205-135411 bp Ori: EXZ74417.1 Feature: domain Description: HTH_XRE Location: 135226-135391 bp Feature: domain Description: HTH_XRE Location: 13 5226-13 53 91 bp Feature: gene Location: 135676-137874 bp Ori: EXZ74401.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 136291-136744 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 13 6291-13 6744 bp Feature: gene Location: 137871-139334 bp Ori: EXZ74449.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 138327-138858 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 13 83 27-13 8858 bp Feature: gene Location: 139349-139468 bp Feature: gene Location: 139461-139865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HTH_XRE (smart00530), RVT-UG8, RVT-UG3

Seq: JGDS01000051.1 Bacteroides fragilis str. 3976T8 gbf3976T8.contig.50, whole genome shotgun sequence (226862 bp)
Overview 1 RT 1: 198428-201706 bp Neighborhood of RT #1 [198428, 201876] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas_Cas1 Feature: gene Location: 198428-198838 bp Ori: EXZ73257.1 Feature: domain Description: Cas_Cmr5 Location: 198476-198722 bp Feature: domain Description: Cas_Cmr5 Location: 1984 76-198722 bp Feature: gene Location: 198841-199785 bp Ori: EXZ73272.1 Feature: domain Description: Cmr6_III-B Location: 198997-199774 bp Feature: domain Description: Cmr6_III-B Location: 198997-199774 bp Feature: gene Location: 199805-200707 bp Ori: EXZ73193.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 200012-200618 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 200012-200618 bp Feature: gene Location: 200716-201876 bp Ori: EXZ73259.1 Gene: cas1 Feature: domain Description: Cas_Cas1 Location: 201079-201706 bp Feature: domain Description: Cas_Cas1 Location: 201079-201706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas_Cas1 (pfam01867)