myRT

myRT report for GCA_000599205.1_ASM59920v1

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Seq: JGDW01000040.1 Bacteroides fragilis str. Korea 419 gbfKorea419.contig.39, whole genome shotgun sequence (183259 bp)
Overview 1 RT 1: 12490-21448 bp Neighborhood of RT #1 [12490, 21456] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 12490-14559 bp Ori: EXZ95519.1 Feature: domain Description: GlnA3 Location: 12493-14557 bp Feature: domain Description: GlnA3 Location: 1 2493-1 4557 bp Feature: gene Location: 15051-17138 bp Feature: gene Location: 17345-18457 bp Ori: EXZ95521.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17660-18209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7660-1 8209 bp Feature: gene Location: 18599-20392 bp Ori: EXZ95522.1 Feature: domain Description: rpsA Location: 18677-20285 bp Feature: domain Description: rpsA Location: 1 8677-20285 bp Feature: gene Location: 20644-21456 bp Ori: EXZ95523.1 Gene: rnz Feature: domain Description: RNase_Z Location: 20647-21448 bp Feature: domain Description: RNase_Z Location: 20647-21 448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDW01000084.1 Bacteroides fragilis str. Korea 419 gbfKorea419.contig.83, whole genome shotgun sequence (193204 bp)
Overview 1 RT 1: 138341-142654 bp Neighborhood of RT #1 [138341, 142668] RVT-GII GIIM RrnaAD lyz_endolysin_autolysin Feature: gene Location: 138341-138649 bp Feature: gene Location: 138683-138886 bp Feature: gene Location: 139229-140524 bp Ori: EXZ93433.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139424-140039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13942 4-140039 bp Feature: domain Description: GIIM Note: maturase Location: 140111-140324 bp Feature: domain Description: GIIM Note: maturase Location: 140111-14032 4 bp Feature: gene Location: 141270-142070 bp Ori: EXZ93434.1 Feature: domain Description: RrnaAD Location: 141297-142035 bp Feature: domain Description: RrnaAD Location: 1412 97-142 035 bp Feature: gene Location: 142345-142668 bp Ori: EXZ93435.1 Feature: domain Description: lyz_endolysin_autolysin Location: 142366-142654 bp Feature: domain Description: lyz_endolysin_autolysin Location: 142 366-142 654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RrnaAD (pfam00398), lyz_endolysin_autolysin (cd00737)

Seq: JGDW01000065.1 Bacteroides fragilis str. Korea 419 gbfKorea419.contig.64, whole genome shotgun sequence (179356 bp)
Overview 1 RT 1: 37687-41293 bp Neighborhood of RT #1 [37687, 41334] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 37687-38097 bp Ori: EXZ94257.1 Feature: domain Description: Cas_Cmr5 Location: 37735-37981 bp Feature: domain Description: Cas_Cmr5 Location: 3 773 5-3 7981 bp Feature: gene Location: 38100-39044 bp Ori: EXZ94258.1 Feature: domain Description: Cmr6_III-B Location: 38256-39033 bp Feature: domain Description: Cmr6_III-B Location: 3 8256-3 903 3 bp Feature: gene Location: 39064-41334 bp Ori: EXZ94259.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39271-39877 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 9271-3 9877 bp Feature: domain Description: Cas1_I-II-III Location: 40336-41293 bp Feature: domain Description: Cas1_I-II-III Location: 403 3 6-41293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)