myRT

myRT report for GCA_000599225.1_ASM59922v1

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Seq: JGDY01000024.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.23, whole genome shotgun sequence (180801 bp)
Overview 1 RT 1: 80125-85275 bp 2 RT 2: 107381-115288 bp Neighborhood of RT #1 [80125, 85343] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 SSB_OBF SSB_OBF Neighborhood of RT #2 [107381, 115288] PRK06917 N6_Mtase COG4646 RVT_N RVT-GII GIIM TssC Feature: gene Location: 80125-80496 bp Feature: gene Location: 80551-81894 bp Ori: EYA05149.1 Feature: domain Description: MPTase-PolyVal Location: 80848-81160 bp Feature: domain Description: MPTase-PolyVal Location: 80848-81 1 60 bp Feature: gene Location: 82157-83962 bp Ori: EYA05257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82421-83243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82421 -83243 bp Feature: domain Description: Intron_maturas2 Location: 83417-83642 bp Feature: domain Description: Intron_maturas2 Location: 8341 7-83642 bp Feature: gene Location: 84508-84726 bp Ori: EYA05252.1 Feature: domain Description: DUF1738 Location: 84562-84712 bp Feature: domain Description: DUF1 738 Location: 84562-8471 2 bp Feature: gene Location: 84732-85343 bp Ori: EYA05256.1 Feature: domain Description: SSB_OBF Location: 84750-84957 bp Feature: domain Description: SSB_OBF Location: 84750-84957 bp Feature: domain Description: SSB_OBF Location: 85056-85275 bp Feature: domain Description: SSB_OBF Location: 85056-85275 bp Feature: gene Location: 107381-107527 bp Feature: gene Location: 107531-111568 bp Ori: EYA05221.1 Feature: domain Description: PRK06917 Location: 107570-107792 bp Feature: domain Description: PRK0691 7 Location: 1 07570-1 07792 bp Feature: domain Description: N6_Mtase Location: 108023-108437 bp Feature: domain Description: N6_Mtase Location: 1 08023-1 08437 bp Feature: domain Description: COG4646 Location: 109220-110951 bp Feature: domain Description: COG4646 Location: 1 09220-1 1 0951 bp Feature: gene Location: 112226-113770 bp Ori: EYA05156.1 Feature: domain Description: RVT_N Location: 112280-112523 bp Feature: domain Description: RVT_N Location: 1 1 2280-1 1 2523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112568-113216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2568-1 1 321 6 bp Feature: domain Description: GIIM Note: maturase Location: 113270-113501 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3270-1 1 3501 bp Feature: gene Location: 113803-114561 bp Ori: EYA05116.1 Feature: domain Description: TssC Location: 113806-114556 bp Feature: domain Description: TssC Location: 1 1 3806-1 1 4556 bp Feature: gene Location: 114674-115288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), SSB_OBF (cd04496), PRK06917 (aspartate aminotransferase family protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), GIIM (pfam08388)
TssC

Seq: JGDY01000016.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.15, whole genome shotgun sequence (166563 bp)
Overview 1 RT 1: 97318-106276 bp Neighborhood of RT #1 [97318, 106284] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 97318-99507 bp Ori: EYA06167.1 Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: gene Location: 99810-101966 bp Feature: gene Location: 102173-103285 bp Ori: EYA06254.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102488-103037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102 488-103037 bp Feature: gene Location: 103427-105220 bp Ori: EYA06230.1 Feature: domain Description: rpsA Location: 103505-105113 bp Feature: domain Description: rpsA Location: 103505-105113 bp Feature: gene Location: 105370-106284 bp Ori: EYA06231.1 Gene: rnz Feature: domain Description: RNase_Z Location: 105385-106276 bp Feature: domain Description: RNase_Z Location: 105385-1062 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDY01000030.1 Bacteroides fragilis str. S6L3 gbfS6L3.contig.29, whole genome shotgun sequence (74919 bp)
Overview 1 RT 1: 37715-44401 bp Neighborhood of RT #1 [37715, 44439] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 BioF Feature: gene Location: 37715-38125 bp Ori: EYA04466.1 Feature: domain Description: Cas_Cmr5 Location: 37763-38009 bp Feature: domain Description: Cas_Cmr5 Location: 3 7763 -3 8009 bp Feature: gene Location: 38128-39072 bp Ori: EYA04430.1 Feature: domain Description: Cmr6_III-B Location: 38284-39061 bp Feature: domain Description: Cmr6_III-B Location: 3 8284-3 9061 bp Feature: gene Location: 39092-41362 bp Ori: EYA04493.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39299-39905 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 9299-3 9905 bp Feature: domain Description: Cas1_I-II-III Location: 40364-41321 bp Feature: domain Description: Cas1_I-II-III Location: 403 64-413 21 bp Feature: gene Location: 42758-42976 bp Ori: EYA04484.1 Feature: domain Description: DUF772 Location: 42800-42968 bp Feature: domain Description: DUF772 Location: 42800-42968 bp Feature: gene Location: 43255-44439 bp Ori: EYA04472.1 Gene: spt Feature: domain Description: BioF Location: 43294-44401 bp Feature: domain Description: BioF Location: 43 294-44401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598), BioF (COG0156)