myRT

myRT report for GCA_000599245.1_ASM59924v1

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Seq: JGDZ01000049.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.49, whole genome shotgun sequence (167106 bp)
Overview 1 RT 1: 97318-106276 bp Neighborhood of RT #1 [97318, 106284] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 97318-99507 bp Ori: EYA10720.1 Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: domain Description: GlnA3 Location: 97393-99505 bp Feature: gene Location: 99810-101966 bp Feature: gene Location: 102215-103285 bp Ori: EYA10722.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102488-103037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 02488-1 03037 bp Feature: gene Location: 103427-105220 bp Ori: EYA10723.1 Feature: domain Description: rpsA Location: 103505-105113 bp Feature: domain Description: rpsA Location: 1 03505-1 051 1 3 bp Feature: gene Location: 105370-106284 bp Ori: EYA10724.1 Gene: rnz Feature: domain Description: RNase_Z Location: 105385-106276 bp Feature: domain Description: RNase_Z Location: 1 05385-1 06276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGDZ01000029.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.29, whole genome shotgun sequence (2473 bp)
Overview 1 RT 1: 1-1394 bp Neighborhood of RT #1 [1, 1792] RVT_N RVT-GII GIIM Feature: gene Location: 1-122 bp Feature: gene Location: 119-1792 bp Ori: EYA11732.1 Feature: domain Description: RVT_N Location: 173-416 bp Feature: domain Description: RVT_N Location: 173-416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1394 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JGDZ01000065.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.65, whole genome shotgun sequence (73956 bp)
Overview 1 RT 1: 37187-43873 bp Neighborhood of RT #1 [37187, 43911] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 BioF Feature: gene Location: 37187-37597 bp Ori: EYA09220.1 Feature: domain Description: Cas_Cmr5 Location: 37235-37481 bp Feature: domain Description: Cas_Cmr5 Location: 3 723 5-3 7481 bp Feature: gene Location: 37600-38544 bp Ori: EYA09221.1 Feature: domain Description: Cmr6_III-B Location: 37756-38533 bp Feature: domain Description: Cmr6_III-B Location: 3 7756-3 853 3 bp Feature: gene Location: 38564-40834 bp Ori: EYA09222.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38771-39377 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 8771-3 93 77 bp Feature: domain Description: Cas1_I-II-III Location: 39836-40793 bp Feature: domain Description: Cas1_I-II-III Location: 3 983 6-40793 bp Feature: gene Location: 42230-42448 bp Ori: EYA09223.1 Feature: domain Description: DUF772 Location: 42272-42440 bp Feature: domain Description: DUF772 Location: 42272-42440 bp Feature: gene Location: 42727-43911 bp Ori: EYA09224.1 Gene: spt Feature: domain Description: BioF Location: 42766-43873 bp Feature: domain Description: BioF Location: 42766-43 873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598), BioF (COG0156)

Seq: JGDZ01000059.1 Bacteroides fragilis str. S6R6 gbfS6R6.contig.59, whole genome shotgun sequence (94400 bp)
Overview 1 RT 1: 62058-67208 bp Neighborhood of RT #1 [62058, 67276] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 SSB_OBF SSB_OBF Feature: gene Location: 62058-62429 bp Feature: gene Location: 62484-63827 bp Ori: EYA10022.1 Feature: domain Description: MPTase-PolyVal Location: 62781-63093 bp Feature: domain Description: MPTase-PolyVal Location: 62781-63093 bp Feature: gene Location: 64090-65895 bp Ori: EYA10023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64354-65176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 354 -65176 bp Feature: domain Description: Intron_maturas2 Location: 65350-65575 bp Feature: domain Description: Intron_maturas2 Location: 65350-65575 bp Feature: gene Location: 66441-66659 bp Ori: EYA10024.1 Feature: domain Description: DUF1738 Location: 66495-66645 bp Feature: domain Description: DUF1738 Location: 664 95-6664 5 bp Feature: gene Location: 66665-67276 bp Ori: EYA10025.1 Feature: domain Description: SSB_OBF Location: 66683-66890 bp Feature: domain Description: SSB_OBF Location: 66683-66890 bp Feature: domain Description: SSB_OBF Location: 66989-67208 bp Feature: domain Description: SSB_OBF Location: 66989-67208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), SSB_OBF (cd04496)