myRT

myRT report for GCA_000599285.2_ASM59928v2

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Seq: JGEE01000034.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.33, whole genome shotgun sequence (420877 bp)
Overview 1 RT 1: 149950-152830 bp 2 RT 2: 308407-317372 bp Neighborhood of RT #1 [149950, 152830] COG3943 RVT-Retrons Neighborhood of RT #2 [308407, 317374] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 149950-150315 bp Ori: EYA32888.1 Feature: domain Description: COG3943 Location: 149992-150247 bp Feature: domain Description: COG3943 Location: 1 49992-1 50247 bp Feature: gene Location: 150580-151455 bp Feature: gene Location: 151486-152343 bp Ori: EYA32890.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151648-152173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 51 648-1 521 73 bp Feature: gene Location: 152368-152511 bp Feature: gene Location: 152711-152830 bp Feature: gene Location: 308407-309321 bp Ori: EYA33023.1 Feature: domain Description: RNase_Z Location: 308422-309313 bp Feature: domain Description: RNase_Z Location: 308422-30931 3 bp Feature: gene Location: 309471-311264 bp Ori: EYA33024.1 Feature: domain Description: rpsA Location: 309549-311157 bp Feature: domain Description: rpsA Location: 309549-31 1 1 57 bp Feature: gene Location: 311406-312518 bp Ori: EYA33025.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 311721-312270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 1 721 -31 2270 bp Feature: gene Location: 312725-314944 bp Feature: gene Location: 315185-317374 bp Ori: EYA33027.1 Feature: domain Description: GlnA3 Location: 315260-317372 bp Feature: domain Description: GlnA3 Location: 31 5260-31 7372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, RNase_Z (TIGR02651), rpsA (TIGR00717), GlnA3 (COG3968)

Seq: JGEE01000023.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.22, whole genome shotgun sequence (606810 bp)
Overview 1 RT 1: 25784-28664 bp 2 RT 2: 184241-193206 bp 3 RT 3: 413603-422562 bp 4 RT 4: 578147-580959 bp Neighborhood of RT #1 [25784, 28664] COG3943 RVT-Retrons Neighborhood of RT #2 [184241, 193208] RNase_Z rpsA RVT-Retrons GlnA3 Neighborhood of RT #3 [413603, 422570] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #4 [578147, 581027] RVT-Retrons COG3943 Feature: gene Location: 25784-26149 bp Ori: EYA35190.1 Feature: domain Description: COG3943 Location: 25826-26081 bp Feature: domain Description: COG3943 Location: 2 582 6-2 6081 bp Feature: gene Location: 26414-27289 bp Feature: gene Location: 27320-28177 bp Ori: EYA35192.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27482-28007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7482 -2 8007 bp Feature: gene Location: 28202-28345 bp Feature: gene Location: 28545-28664 bp Feature: gene Location: 184241-185155 bp Ori: EYA35325.1 Feature: domain Description: RNase_Z Location: 184256-185147 bp Feature: domain Description: RNase_Z Location: 1842 56-185147 bp Feature: gene Location: 185305-187098 bp Ori: EYA35326.1 Feature: domain Description: rpsA Location: 185383-186991 bp Feature: domain Description: rpsA Location: 185383-186991 bp Feature: gene Location: 187240-188352 bp Ori: EYA35327.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187555-188104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187555-188104 bp Feature: gene Location: 188559-190778 bp Feature: gene Location: 191019-193208 bp Ori: EYA35329.1 Feature: domain Description: GlnA3 Location: 191094-193206 bp Feature: domain Description: GlnA3 Location: 191094-1932 06 bp Feature: gene Location: 413603-415792 bp Ori: EYA35512.1 Feature: domain Description: GlnA3 Location: 413678-415790 bp Feature: domain Description: GlnA3 Location: 413678-415790 bp Feature: gene Location: 416033-418252 bp Feature: gene Location: 418459-419571 bp Ori: EYA35514.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 418774-419323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 418774-41932 3 bp Feature: gene Location: 419713-421506 bp Ori: EYA35515.1 Feature: domain Description: rpsA Location: 419791-421399 bp Feature: domain Description: rpsA Location: 419791-42 1399 bp Feature: gene Location: 421656-422570 bp Ori: EYA35516.1 Feature: domain Description: RNase_Z Location: 421671-422562 bp Feature: domain Description: RNase_Z Location: 42 1671-42 2 562 bp Feature: gene Location: 578147-578266 bp Feature: gene Location: 578466-578609 bp Feature: gene Location: 578634-579491 bp Ori: EYA35649.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 578796-579321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 578796-57932 1 bp Feature: gene Location: 579522-580397 bp Feature: gene Location: 580662-581027 bp Ori: EYA35651.1 Feature: domain Description: COG3943 Location: 580704-580959 bp Feature: domain Description: COG3943 Location: 580704-580959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, RNase_Z (TIGR02651), rpsA (TIGR00717), GlnA3 (COG3968)

Seq: JGEE01000045.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.44, whole genome shotgun sequence (447763 bp)
Overview 1 RT 1: 129270-133830 bp Neighborhood of RT #1 [129270, 133830] NHL 7WD40 RVT-GII Feature: gene Location: 129270-130637 bp Feature: gene Location: 130649-131689 bp Ori: EYA31710.1 Feature: domain Description: NHL Location: 130856-131222 bp Feature: domain Description: NHL Location: 13 0856-13 1222 bp Feature: domain Description: 7WD40 Location: 131273-131654 bp Feature: domain Description: 7WD40 Location: 13 1273 -13 1654 bp Feature: gene Location: 132701-132889 bp Ori: EYA31711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132794-132863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 2794-13 2863 bp Feature: gene Location: 133550-133684 bp Feature: gene Location: 133693-133830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT-GII

Seq: JGEE01000024.1 Bacteroides fragilis str. 1009-4-F #7 gbf10094F7.contig.23, whole genome shotgun sequence (499777 bp)
Overview 1 RT 1: 103504-112463 bp 2 RT 2: 268048-270860 bp Neighborhood of RT #1 [103504, 112471] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [268048, 270928] RVT-Retrons COG3943 Feature: gene Location: 103504-105693 bp Ori: EYA34827.1 Feature: domain Description: GlnA3 Location: 103579-105691 bp Feature: domain Description: GlnA3 Location: 103579-105691 bp Feature: gene Location: 105934-108153 bp Feature: gene Location: 108360-109472 bp Ori: EYA34829.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108675-109224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108675-109224 bp Feature: gene Location: 109614-111407 bp Ori: EYA34830.1 Feature: domain Description: rpsA Location: 109692-111300 bp Feature: domain Description: rpsA Location: 109692-111300 bp Feature: gene Location: 111557-112471 bp Ori: EYA34831.1 Feature: domain Description: RNase_Z Location: 111572-112463 bp Feature: domain Description: RNase_Z Location: 111572-1124 63 bp Feature: gene Location: 268048-268167 bp Feature: gene Location: 268367-268510 bp Feature: gene Location: 268535-269392 bp Ori: EYA34964.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 268697-269222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 268697-269222 bp Feature: gene Location: 269423-270298 bp Feature: gene Location: 270563-270928 bp Ori: EYA34966.1 Feature: domain Description: COG3943 Location: 270605-270860 bp Feature: domain Description: COG394 3 Location: 270605-270860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), COG3943 (Uncharacterized conserved protein )