myRT

myRT report for GCA_000599305.1_ASM59930v1

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Seq: JGEL01000032.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.31, whole genome shotgun sequence (98793 bp)
Overview 1 RT 1: 61249-64855 bp Neighborhood of RT #1 [61249, 64896] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 61249-61659 bp Ori: EYA66241.1 Feature: domain Description: Cas_Cmr5 Location: 61297-61543 bp Feature: domain Description: Cas_Cmr5 Location: 61 297-61 543 bp Feature: gene Location: 61662-62606 bp Ori: EYA66275.1 Feature: domain Description: Cmr6_III-B Location: 61818-62595 bp Feature: domain Description: Cmr6_III-B Location: 61 81 8-62595 bp Feature: gene Location: 62626-64896 bp Ori: EYA66227.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 62833-63439 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 62833-63439 bp Feature: domain Description: Cas1_I-II-III Location: 63898-64855 bp Feature: domain Description: Cas1 _I-II-III Location: 63898-64855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGEL01000016.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.15, whole genome shotgun sequence (194174 bp)
Overview 1 RT 1: 103512-112470 bp Neighborhood of RT #1 [103512, 112478] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103512-105701 bp Ori: EYA67543.1 Feature: domain Description: GlnA3 Location: 103587-105699 bp Feature: domain Description: GlnA3 Location: 103587-105699 bp Feature: gene Location: 106004-108160 bp Feature: gene Location: 108409-109479 bp Ori: EYA67658.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108682-109231 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108682 -1092 31 bp Feature: gene Location: 109621-111414 bp Ori: EYA67598.1 Feature: domain Description: rpsA Location: 109699-111307 bp Feature: domain Description: rpsA Location: 109699-111307 bp Feature: gene Location: 111564-112478 bp Ori: EYA67659.1 Gene: rnz Feature: domain Description: RNase_Z Location: 111579-112470 bp Feature: domain Description: RNase_Z Location: 111579-112 470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGEL01000073.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.72, whole genome shotgun sequence (9502 bp)
Overview 1 RT 1: 3498-8474 bp Neighborhood of RT #1 [3498, 8474] pfam06321 RVT-UNC GIIM Feature: gene Location: 3498-6452 bp Ori: EYA64030.1 Feature: domain Description: pfam06321 Location: 3624-4290 bp Feature: domain Description: pfam063 21 Location: 3 624-4290 bp Feature: gene Location: 6501-6761 bp Feature: gene Location: 6730-7893 bp Ori: EYA64032.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 6901-7381 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 6901-73 81 bp Feature: domain Description: GIIM Note: maturase Location: 7420-7597 bp Feature: domain Description: GIIM Note: maturase Location: 7420-7597 bp Feature: gene Location: 7899-8069 bp Feature: gene Location: 8280-8474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam06321 (P_gingi_FimA;Major fimbrial subunit protein (FimA)), RVT-UG17/RVT-DGRs/RVT-CRISPR/RVT-GII(RVT-UNC), GIIM (pfam08388)