myRT

myRT report for GCA_000599365.1_ASM59936v1

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Seq: JGER01000012.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.11, whole genome shotgun sequence (146440 bp)
Overview 1 RT 1: 71546-80505 bp Neighborhood of RT #1 [71546, 80513] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 71546-73726 bp Ori: EYA96958.1 Feature: domain Description: GlnA3 Location: 71612-73724 bp Feature: domain Description: GlnA3 Location: 71 61 2-73724 bp Feature: gene Location: 74038-76194 bp Feature: gene Location: 76401-77513 bp Ori: EYA96972.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76716-77265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7671 6-77265 bp Feature: gene Location: 77655-79448 bp Ori: EYA96974.1 Feature: domain Description: rpsA Location: 77733-79341 bp Feature: domain Description: rpsA Location: 77733-79341 bp Feature: gene Location: 79599-80513 bp Ori: EYA96990.1 Gene: rnz Feature: domain Description: RNase_Z Location: 79614-80505 bp Feature: domain Description: RNase_Z Location: 7961 4-80505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGER01000077.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.76, whole genome shotgun sequence (8594 bp)
Overview 1 RT 1: 4413-8019 bp Neighborhood of RT #1 [4413, 8060] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 4413-4823 bp Ori: EYA93645.1 Feature: domain Description: Cas_Cmr5 Location: 4461-4707 bp Feature: domain Description: Cas_Cmr5 Location: 4461-4707 bp Feature: gene Location: 4826-5770 bp Ori: EYA93646.1 Feature: domain Description: Cmr6_III-B Location: 4982-5759 bp Feature: domain Description: Cmr6_III-B Location: 4982 -5759 bp Feature: gene Location: 5790-8060 bp Ori: EYA93647.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5997-6603 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5997-6603 bp Feature: domain Description: Cas1_I-II-III Location: 7062-8019 bp Feature: domain Description: Cas1_I-II-III Location: 7062 -8019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JGER01000036.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.35, whole genome shotgun sequence (213485 bp)
Overview 1 RT 1: 157860-164906 bp 2 RT 2: 179765-184849 bp Neighborhood of RT #1 [157860, 165901] N6_Mtase COG4646 RVT-GII Intron_maturas2 COG4646 Helicase_C Neighborhood of RT #2 [179765, 184849] DUF4906 BACON RVT-UNC GIIM Feature: gene Location: 157860-157997 bp Feature: gene Location: 158094-160925 bp Ori: EYA95309.1 Feature: domain Description: N6_Mtase Location: 158127-158733 bp Feature: domain Description: N6_Mtase Location: 158127-15873 3 bp Feature: domain Description: COG4646 Location: 160002-160914 bp Feature: domain Description: COG4646 Location: 160002-160914 bp Feature: gene Location: 161452-163254 bp Ori: EYA95326.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161716-162538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161716-16253 8 bp Feature: domain Description: Intron_maturas2 Location: 162691-162943 bp Feature: domain Description: Intron_maturas2 Location: 162691-162943 bp Feature: gene Location: 163391-164707 bp Ori: EYA95228.1 Feature: domain Description: COG4646 Location: 163400-164495 bp Feature: domain Description: COG4646 Location: 163 400-164495 bp Feature: gene Location: 164750-165901 bp Ori: EYA95256.1 Feature: domain Description: Helicase_C Location: 164756-164906 bp Feature: domain Description: Helicase_C Location: 164756-164906 bp Feature: gene Location: 179765-182824 bp Ori: EYA95296.1 Feature: domain Description: DUF4906 Location: 180260-180824 bp Feature: domain Description: DUF4906 Location: 180260-180824 bp Feature: domain Description: BACON Location: 181085-181274 bp Feature: domain Description: BACON Location: 181085-181274 bp Feature: gene Location: 182886-183077 bp Feature: gene Location: 183105-184268 bp Ori: EYA95201.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 183276-183756 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 183 276-183 756 bp Feature: domain Description: GIIM Note: maturase Location: 183795-183972 bp Feature: domain Description: GIIM Note: maturase Location: 183 795-183 972 bp Feature: gene Location: 184274-184444 bp Feature: gene Location: 184565-184849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), DUF4906 (pfam16249), BACON (pfam13004), RVT-UG17/RVT-DGRs/RVT-CRISPR/RVT-GII(RVT-UNC), GIIM (pfam08388)

Seq: JGER01000028.1 Bacteroides fragilis str. S38L5 gbfS38L5.contig.27, whole genome shotgun sequence (307159 bp)
Overview 1 RT 1: 262111-271195 bp Neighborhood of RT #1 [262111, 271195] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM ACT_CBS Feature: gene Location: 262111-262563 bp Ori: EYA95829.1 Feature: domain Description: DUF1896 Location: 262141-262561 bp Feature: domain Description: DUF1896 Location: 26214 1-262561 bp Feature: gene Location: 262553-267256 bp Ori: EYA95818.1 Feature: domain Description: N6_Mtase Location: 262865-263480 bp Feature: domain Description: N6_Mtase Location: 262865-2634 80 bp Feature: domain Description: COG4646 Location: 264596-266873 bp Feature: domain Description: COG4 64 6 Location: 264 596-266873 bp Feature: gene Location: 267916-269583 bp Ori: EYA95866.1 Feature: domain Description: RVT_N Location: 267970-268213 bp Feature: domain Description: RVT_N Location: 267970-268213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268258-268906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268258-268906 bp Feature: domain Description: GIIM Note: maturase Location: 268960-269191 bp Feature: domain Description: GIIM Note: maturase Location: 268960-269191 bp Feature: gene Location: 269804-270850 bp Ori: EYA95943.1 Feature: domain Description: ACT_CBS Location: 270068-270248 bp Feature: domain Description: ACT_CBS Location: 270068-27024 8 bp Feature: gene Location: 271055-271195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACT_CBS (cd04884)