myRT

myRT report for GCA_000599385.1_ASM59938v1

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Seq: JGES01000015.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.14, whole genome shotgun sequence (89794 bp)
Overview 1 RT 1: 19137-28095 bp Neighborhood of RT #1 [19137, 28103] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 19137-21317 bp Ori: EYB01622.1 Feature: domain Description: GlnA3 Location: 19203-21315 bp Feature: domain Description: GlnA3 Location: 1 9203-21 31 5 bp Feature: gene Location: 21629-23785 bp Feature: gene Location: 23992-25104 bp Ori: EYB01624.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24307-24856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24307-24856 bp Feature: gene Location: 25246-27039 bp Ori: EYB01625.1 Feature: domain Description: rpsA Location: 25324-26932 bp Feature: domain Description: rpsA Location: 25324-26932 bp Feature: gene Location: 27291-28103 bp Ori: EYB01626.1 Gene: rnz Feature: domain Description: RNase_Z Location: 27294-28095 bp Feature: domain Description: RNase_Z Location: 27294-28095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: JGES01000032.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.31, whole genome shotgun sequence (162413 bp)
Overview 1 RT 1: 37405-44091 bp Neighborhood of RT #1 [37405, 44129] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III DUF772 BioF Feature: gene Location: 37405-37815 bp Ori: EYB00061.1 Feature: domain Description: Cas_Cmr5 Location: 37453-37699 bp Feature: domain Description: Cas_Cmr5 Location: 37453-37699 bp Feature: gene Location: 37818-38762 bp Ori: EYB00062.1 Feature: domain Description: Cmr6_III-B Location: 37974-38751 bp Feature: domain Description: Cmr6_III-B Location: 37974-38751 bp Feature: gene Location: 38782-41052 bp Ori: EYB00063.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38989-39595 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38989-39595 bp Feature: domain Description: Cas1_I-II-III Location: 40054-41011 bp Feature: domain Description: Cas1_I-II-III Location: 40054-41011 bp Feature: gene Location: 42448-42666 bp Ori: EYB00064.1 Feature: domain Description: DUF772 Location: 42490-42658 bp Feature: domain Description: DUF772 Location: 42 490-42 658 bp Feature: gene Location: 42945-44129 bp Ori: EYB00065.1 Gene: spt Feature: domain Description: BioF Location: 42984-44091 bp Feature: domain Description: BioF Location: 42 984-44091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF772 (pfam05598), BioF (COG0156)

Seq: JGES01000028.1 Bacteroides fragilis str. S6L8 gbfS6L8.contig.27, whole genome shotgun sequence (716595 bp)
Overview 1 RT 1: 77597-82747 bp 2 RT 2: 105003-112760 bp Neighborhood of RT #1 [77597, 82815] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 SSB_OBF SSB_OBF Neighborhood of RT #2 [105003, 112760] N6_Mtase COG4646 RVT_N RVT-GII GIIM TssC Feature: gene Location: 77597-77968 bp Feature: gene Location: 78023-79366 bp Ori: EYB00349.1 Feature: domain Description: MPTase-PolyVal Location: 78320-78632 bp Feature: domain Description: MPTase-PolyVal Location: 783 20-7863 2 bp Feature: gene Location: 79629-81434 bp Ori: EYB00350.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79893-80715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79893 -80715 bp Feature: domain Description: Intron_maturas2 Location: 80889-81114 bp Feature: domain Description: Intron_maturas2 Location: 80889-81114 bp Feature: gene Location: 81980-82198 bp Ori: EYB00351.1 Feature: domain Description: DUF1738 Location: 82034-82184 bp Feature: domain Description: DUF173 8 Location: 8203 4-82184 bp Feature: gene Location: 82204-82815 bp Ori: EYB00352.1 Feature: domain Description: SSB_OBF Location: 82222-82429 bp Feature: domain Description: SSB_OBF Location: 82222-82429 bp Feature: domain Description: SSB_OBF Location: 82528-82747 bp Feature: domain Description: SSB_OBF Location: 82528-82747 bp Feature: gene Location: 105003-109040 bp Ori: EYB00381.1 Feature: domain Description: N6_Mtase Location: 105495-105909 bp Feature: domain Description: N6_Mtase Location: 105495-105909 bp Feature: domain Description: COG4646 Location: 106692-108423 bp Feature: domain Description: COG4646 Location: 106692-108423 bp Feature: gene Location: 109440-109556 bp Feature: gene Location: 109698-111242 bp Ori: EYB00383.1 Feature: domain Description: RVT_N Location: 109752-109995 bp Feature: domain Description: RVT_N Location: 109752-109995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110040-110688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110040-110688 bp Feature: domain Description: GIIM Note: maturase Location: 110742-110973 bp Feature: domain Description: GIIM Note: maturase Location: 110742-110973 bp Feature: gene Location: 111275-112033 bp Ori: EYB00384.1 Feature: domain Description: TssC Location: 111278-112028 bp Feature: domain Description: TssC Location: 111278-112028 bp Feature: gene Location: 112146-112760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), SSB_OBF (cd04496), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), GIIM (pfam08388), TssC