myRT

myRT report for GCA_000599725.2_a5_miseq_linux_20140113

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Seq: JFFJ01000119.1 Escherichia coli strain UCD_JA03 contig_119, whole genome shotgun sequence (6370 bp)
Overview 1 RT 1: 752-6350 bp Neighborhood of RT #1 [752, 6361] YeeP PHA02517 RVT-GII GIIM PHA02517 Tra8 Feature: gene Location: 752-1624 bp Feature: domain Description: YeeP Location: 755-1622 bp Feature: domain Description: YeeP Location: 755-1 622 bp Feature: gene Location: 2075-2515 bp Feature: domain Description: PHA02517 Location: 2078-2486 bp Feature: domain Description: PHA0251 7 Location: 2078-2486 bp Feature: gene Location: 2644-4167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2917-3649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 7-3649 bp Feature: domain Description: GIIM Note: maturase Location: 3724-3922 bp Feature: domain Description: GIIM Note: maturase Location: 3724-3922 bp Feature: gene Location: 4759-5022 bp Feature: domain Description: PHA02517 Location: 4762-4957 bp Feature: domain Description: PHA0251 7 Location: 4762-4957 bp Feature: gene Location: 5315-6361 bp Feature: domain Description: Tra8 Location: 5330-6350 bp Feature: domain Description: Tra8 Location: 5330-6350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra8 (COG2826), YeeP (COG3596)

Seq: JFFJ01000003.1 Escherichia coli strain UCD_JA03 contig_3, whole genome shotgun sequence (77245 bp)
Overview 1 RT 1: 51292-55174 bp Neighborhood of RT #1 [51292, 55179] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51292-51750 bp Feature: domain Description: dut Location: 51298-51745 bp Feature: domain Description: dut Location: 512 98-51745 bp Feature: gene Location: 51857-52453 bp Feature: domain Description: slmA Location: 51863-52439 bp Feature: domain Description: slmA Location: 51863-52 439 bp Feature: gene Location: 52499-53458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52634-53183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 634-53183 bp Feature: gene Location: 53756-54397 bp Feature: domain Description: pyrE Location: 53759-54392 bp Feature: domain Description: pyrE Location: 53759-54392 bp Feature: gene Location: 54463-55179 bp Feature: domain Description: rph Location: 54466-55174 bp Feature: domain Description: rph Location: 54466-55174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)